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  5. EJF58827

EJF58827


Description : RNA polymerase Rpb1, domain 3


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EJF58827
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.07 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.03 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.03 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.02 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.07 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.1 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.03 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.05 OF
EAA27335 No alias RNA polymerase Rpb1, domain 5 0.01 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.05 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.09 OF
EAU93247 No alias RNA polymerase II large subunit 0.06 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.06 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.02 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.02 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.06 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.02 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.04 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.06 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.04 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.04 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.04 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.03 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.02 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 351 514
IPR007083 RNA_pol_Rpb1_4 704 808
IPR007075 RNA_pol_Rpb1_6 881 1066
IPR000684 RNA_pol_II_repeat_euk 1647 1660
IPR000684 RNA_pol_II_repeat_euk 1703 1716
IPR000684 RNA_pol_II_repeat_euk 1676 1688
IPR000684 RNA_pol_II_repeat_euk 1689 1702
IPR000684 RNA_pol_II_repeat_euk 1619 1632
IPR000684 RNA_pol_II_repeat_euk 1605 1618
IPR000684 RNA_pol_II_repeat_euk 1633 1646
IPR000684 RNA_pol_II_repeat_euk 1661 1673
IPR007073 RNA_pol_Rpb1_7 1151 1286
IPR007080 RNA_pol_Rpb1_1 14 349
IPR007081 RNA_pol_Rpb1_5 815 1410
IPR007066 RNA_pol_Rpb1_3 518 677
No external refs found!