1. Home
  2. Species
  3. Saccharomyces cerevisiae
  4. Sequence
  5. YDL140C

YDL140C


Description : RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime [Source:SGD;Acc:S000002299]


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YDL140C
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.11 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.14 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.08 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.09 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.08 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.04 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.06 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.09 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.04 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.03 OF
EAU93247 No alias RNA polymerase II large subunit 0.07 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.04 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.03 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.02 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.03 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.08 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.04 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.07 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.02 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.06 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.02 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.04 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.02 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.07 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.02 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 807 1396
IPR007080 RNA_pol_Rpb1_1 12 340
IPR007083 RNA_pol_Rpb1_4 695 800
IPR000722 RNA_pol_asu 342 507
IPR007073 RNA_pol_Rpb1_7 1141 1274
IPR007066 RNA_pol_Rpb1_3 510 669
IPR000684 RNA_pol_II_repeat_euk 1648 1661
IPR000684 RNA_pol_II_repeat_euk 1592 1605
IPR000684 RNA_pol_II_repeat_euk 1634 1647
IPR000684 RNA_pol_II_repeat_euk 1620 1633
IPR000684 RNA_pol_II_repeat_euk 1676 1689
IPR000684 RNA_pol_II_repeat_euk 1564 1577
IPR000684 RNA_pol_II_repeat_euk 1578 1591
IPR000684 RNA_pol_II_repeat_euk 1606 1619
IPR000684 RNA_pol_II_repeat_euk 1690 1703
IPR000684 RNA_pol_II_repeat_euk 1550 1563
IPR000684 RNA_pol_II_repeat_euk 1662 1675
IPR000684 RNA_pol_II_repeat_euk 1704 1717
IPR007075 RNA_pol_Rpb1_6 873 1056
No external refs found!