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  5. EAU93247

EAU93247


Description : RNA polymerase II large subunit


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EAU93247
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.08 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.02 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.12 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.07 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.08 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.07 OF
CAK96852 No alias RNA polymerase Rpb1, domain 3 0.02 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.04 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.05 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.08 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.11 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.04 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.09 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.02 OF
EGR47538 No alias RNA polymerase Rpb1, domain 1 0.02 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.02 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.06 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.08 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.05 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.06 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.06 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.07 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.06 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.04 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.02 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.02 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.05 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.07 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.07 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 524 683
IPR007075 RNA_pol_Rpb1_6 887 1072
IPR007080 RNA_pol_Rpb1_1 14 355
IPR000684 RNA_pol_II_repeat_euk 1647 1660
IPR000684 RNA_pol_II_repeat_euk 1631 1645
IPR000684 RNA_pol_II_repeat_euk 1676 1689
IPR000684 RNA_pol_II_repeat_euk 1661 1675
IPR000684 RNA_pol_II_repeat_euk 1619 1630
IPR000684 RNA_pol_II_repeat_euk 1691 1703
IPR000684 RNA_pol_II_repeat_euk 1704 1716
IPR000722 RNA_pol_asu 357 520
IPR007081 RNA_pol_Rpb1_5 821 1416
IPR007083 RNA_pol_Rpb1_4 709 814
IPR007073 RNA_pol_Rpb1_7 1157 1292
No external refs found!