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  5. KHC69799

KHC69799


Description : DNA-directed RNA polymerase II subunit RPB1;"RNA polymerase Rpb1, domain 1";"RNA polymerase Rpb1, domain 7";"RNA polymerase Rpb1, domain 2";"RNA polymerase Rpb1, domain 5";RNA polymerase Rpb1 C-terminal repeat;"RNA polymerase Rpb1, domain 4";"RNA polymerase Rpb1, domain 6";"RNA polymerase Rpb1, domain 3"


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KHC69799
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.07 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.03 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.06 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.07 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.06 OF
CAG82462 No alias RNA polymerase Rpb1, domain 5 0.05 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.04 OF
CAK96852 No alias RNA polymerase Rpb1, domain 3 0.08 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.11 OF
EAA27335 No alias RNA polymerase Rpb1, domain 5 0.02 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.04 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.06 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.08 OF
EAU80581 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
EAU93247 No alias RNA polymerase II large subunit 0.06 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.03 OF
EGR47538 No alias RNA polymerase Rpb1, domain 1 0.04 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.07 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.02 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.02 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.08 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.11 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.02 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.02 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.05 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.03 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.07 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.09 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 13 340
IPR007073 RNA_pol_Rpb1_7 1142 1276
IPR000722 RNA_pol_asu 342 507
IPR007081 RNA_pol_Rpb1_5 807 1398
IPR000684 RNA_pol_II_repeat_euk 1677 1690
IPR000684 RNA_pol_II_repeat_euk 1579 1592
IPR000684 RNA_pol_II_repeat_euk 1607 1620
IPR000684 RNA_pol_II_repeat_euk 1621 1634
IPR000684 RNA_pol_II_repeat_euk 1593 1606
IPR000684 RNA_pol_II_repeat_euk 1649 1662
IPR000684 RNA_pol_II_repeat_euk 1663 1676
IPR000684 RNA_pol_II_repeat_euk 1635 1648
IPR000684 RNA_pol_II_repeat_euk 1705 1718
IPR000684 RNA_pol_II_repeat_euk 1565 1578
IPR000684 RNA_pol_II_repeat_euk 1691 1704
IPR007083 RNA_pol_Rpb1_4 696 800
IPR007075 RNA_pol_Rpb1_6 873 1057
IPR007066 RNA_pol_Rpb1_3 510 669
No external refs found!