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CBF88741


Description : DNA-directed RNA polymerase Fragment


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CBF88741
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.08 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.02 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.02 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.09 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.15 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.11 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.14 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.03 OF
EAU93247 No alias RNA polymerase II large subunit 0.05 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.05 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.06 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.05 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.15 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.04 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.07 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.06 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.04 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.06 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.04 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000684 RNA_pol_II_repeat_euk 1672 1690
IPR000684 RNA_pol_II_repeat_euk 1558 1569
IPR000684 RNA_pol_II_repeat_euk 1688 1700
IPR000684 RNA_pol_II_repeat_euk 1732 1743
IPR000684 RNA_pol_II_repeat_euk 1601 1612
IPR000684 RNA_pol_II_repeat_euk 1644 1657
IPR000684 RNA_pol_II_repeat_euk 1586 1599
IPR000684 RNA_pol_II_repeat_euk 1726 1738
IPR000684 RNA_pol_II_repeat_euk 1702 1716
IPR000684 RNA_pol_II_repeat_euk 1630 1643
IPR000684 RNA_pol_II_repeat_euk 1573 1583
IPR000684 RNA_pol_II_repeat_euk 1614 1626
IPR000684 RNA_pol_II_repeat_euk 1658 1671
IPR007080 RNA_pol_Rpb1_1 14 354
IPR007066 RNA_pol_Rpb1_3 524 689
IPR007073 RNA_pol_Rpb1_7 1161 1294
IPR007083 RNA_pol_Rpb1_4 714 820
IPR007075 RNA_pol_Rpb1_6 893 1076
IPR000722 RNA_pol_asu 356 521
IPR007081 RNA_pol_Rpb1_5 827 1421
No external refs found!