YHR098C

Description : Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat; COPII coat is required for cargo selection during vesicle formation in ER to Golgi transport; scaffolding function of Lst1p required to generate vesicles that can accommodate difficult cargo proteins that include large oligomeric assemblies and asymmetrically distributed membrane proteins; homologous to Sec24p and Sfb2p [Source:SGD;Acc:S000001140]

Gene families : OG_03_0002619 (OF) Phylogenetic Tree(s): OG0002619_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: YHR098C
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AFR98318	No alias	protein transporter SEC24;Sec23/Sec24 zinc...	0.06	OF
AOA69761	No alias	Sec23/Sec24, helical domain	0.1	OF
CAG79519	No alias	Zinc finger, Sec23/Sec24-type	0.11	OF
CAK42831	No alias	Sec23/Sec24 helical domain	0.09	OF
CBF83444	No alias	vesicle coat complex COPII, subunit Sec24 family...	0.08	OF
EAA28841	No alias	Zinc finger, Sec23/Sec24-type	0.07	OF
EDN95273	No alias	Zinc finger, Sec23/Sec24-type	0.08	OF
EGR48947	No alias	Zinc finger, Sec23/Sec24-type	0.04	OF
ESU17979	No alias	Sec23/Sec24, trunk domain	0.09	OF
KHC81401	No alias	protein transporter SEC24;Sec23/Sec24 beta-sandwich...	0.06	OF
POW08541	No alias	Gelsolin-like domain;Zinc finger,...	0.02	OF
SPBC4.03c.1	No alias	COPII-coated vesicle component Sfb3 (predicted)...	0.08	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006895	Znf_Sec23_Sec24	217	252
IPR006896	Sec23/24_trunk_dom	296	531
IPR012990	Sec23_24_beta_S	537	619
IPR006900	Sec23/24_helical_dom	633	734
IPR007123	Gelsolin-like_dom	771	835

External Links

No external refs found!

YHR098C

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation