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  5. EGR47538

EGR47538


Description : RNA polymerase Rpb1, domain 1


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EGR47538
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.03 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.03 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.04 OF
EAU80581 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
EAU93247 No alias RNA polymerase II large subunit 0.02 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.05 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.04 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.02 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.04 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.02 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.02 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 710 813
IPR007081 RNA_pol_Rpb1_5 820 1416
IPR007075 RNA_pol_Rpb1_6 886 1070
IPR000722 RNA_pol_asu 356 521
IPR007073 RNA_pol_Rpb1_7 1154 1288
IPR007066 RNA_pol_Rpb1_3 524 682
IPR007080 RNA_pol_Rpb1_1 14 354
No external refs found!