SPBC28F2.12.1

Description : RNA polymerase II large subunit Rpb1 [Source:PomBase;Acc:SPBC28F2.12]

Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SPBC28F2.12.1
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AFR95654	No alias	DNA-directed RNA polymerase II subunit RPB1;RNA...	0.05	OF
AOA68763	No alias	RNA polymerase Rpb1, domain 6	0.05	OF
CAG82229	No alias	RNA polymerase Rpb1, domain 6	0.03	OF
CAK37321	No alias	RNA polymerase Rpb1 C-terminal repeat	0.04	OF
CBF88741	No alias	DNA-directed RNA polymerase Fragment	0.06	OF
EAA34861	No alias	RNA polymerase Rpb1, domain 3	0.06	OF
EAL90799	No alias	DNA-dependent RNA polymerase II largest subunit, putative	0.02	OF
EAU93247	No alias	RNA polymerase II large subunit	0.02	OF
EDO03447	No alias	RNA polymerase, alpha subunit	0.02	OF
EED85755	No alias	RNA polymerase Rpb1, domain 7	0.02	OF
ESU06166	No alias	DNA-directed RNA polymerase II largest subunit	0.04	OF
YDL140C	No alias	RNA polymerase II largest subunit B220; part of central...	0.07	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	14	346
IPR000722	RNA_pol_asu	348	513
IPR000684	RNA_pol_II_repeat_euk	1740	1752
IPR000684	RNA_pol_II_repeat_euk	1579	1592
IPR000684	RNA_pol_II_repeat_euk	1705	1718
IPR000684	RNA_pol_II_repeat_euk	1691	1704
IPR000684	RNA_pol_II_repeat_euk	1726	1739
IPR000684	RNA_pol_II_repeat_euk	1621	1634
IPR000684	RNA_pol_II_repeat_euk	1649	1662
IPR000684	RNA_pol_II_repeat_euk	1642	1655
IPR000684	RNA_pol_II_repeat_euk	1593	1606
IPR000684	RNA_pol_II_repeat_euk	1607	1620
IPR000684	RNA_pol_II_repeat_euk	1698	1711
IPR000684	RNA_pol_II_repeat_euk	1670	1683
IPR000684	RNA_pol_II_repeat_euk	1656	1669
IPR000684	RNA_pol_II_repeat_euk	1677	1690
IPR000684	RNA_pol_II_repeat_euk	1712	1725
IPR000684	RNA_pol_II_repeat_euk	1635	1648
IPR000684	RNA_pol_II_repeat_euk	1684	1697
IPR000684	RNA_pol_II_repeat_euk	1628	1641
IPR000684	RNA_pol_II_repeat_euk	1663	1676
IPR007073	RNA_pol_Rpb1_7	1144	1280
IPR007083	RNA_pol_Rpb1_4	701	806
IPR007081	RNA_pol_Rpb1_5	813	1402
IPR007066	RNA_pol_Rpb1_3	516	675
IPR007075	RNA_pol_Rpb1_6	879	1059

External Links

No external refs found!

SPBC28F2.12.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation