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  5. SPAC16C9.06c.1

SPAC16C9.06c.1


Description : ATP-dependent RNA helicase Upf1 [Source:PomBase;Acc:SPAC16C9.06c]


Gene families : OG_03_0000143 (OF) Phylogenetic Tree(s): OG0000143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SPAC16C9.06c.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AOA68249 No alias RNA helicase UPF1, UPF2-interacting domain 0.06 OF
CAG81409 No alias RNA helicase UPF1, UPF2-interacting domain 0.04 OF
CAK32628 No alias AAA domain 0.03 OF
EAA31997 No alias DNA2/NAM7 helicase, AAA domain 0.04 OF
EAL90638 No alias regulator of nonsense transcripts, putative 0.03 OF
EAU82858 No alias RNA helicase 0.03 OF
EAU87614 No alias DNA2/NAM7 helicase-like, AAA domain 0.03 OF
EAU88694 No alias ATP dependent helicase 0.02 OF
EDN91568 No alias DNA2/NAM7 helicase-like, AAA domain 0.03 OF
ESU16575 No alias ATP-dependent helicase NAM7 0.04 OF
KHC70522 No alias hypothetical protein;AAA domain 0.03 OF
MGG_00976T0 No alias Regulator-nonsense transcripts 1... 0.07 OF
POW07607 No alias DNA2/NAM7 helicase, AAA domain;DNA2/NAM7 helicase-like,... 0.02 OF
YMR080C No alias ATP-dependent RNA helicase of the SFI superfamily;... 0.08 OF

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_AAA 608 804
IPR040812 DUF5599 245 336
IPR041677 DNA2/NAM7_AAA_11 500 601
IPR018999 RNA-helicase_UPF1_UPF2-interct 43 193
No external refs found!