POW02026


Description : RNA polymerase, alpha subunit;RNA polymerase Rpb1, domain 3;RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1, domain 7;RNA polymerase Rpb1, domain 5;RNA polymerase Rpb1, domain 5;RNA polymerase Rpb1, domain 4;RNA polymerase Rpb1, domain 6;RNA polymerase II, heptapeptide repeat, eukaryotic


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: POW02026
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.07 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.03 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.04 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.05 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.03 OF
CAG82462 No alias RNA polymerase Rpb1, domain 5 0.02 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.05 OF
CAK96852 No alias RNA polymerase Rpb1, domain 3 0.02 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.04 OF
EAA27335 No alias RNA polymerase Rpb1, domain 5 0.02 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.04 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.03 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.05 OF
EAU80581 No alias DNA-directed RNA polymerase III largest subunit 0.04 OF
EAU93247 No alias RNA polymerase II large subunit 0.04 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.09 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.04 OF
EGR47538 No alias RNA polymerase Rpb1, domain 1 0.02 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.04 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.04 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.02 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.03 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.02 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.02 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.06 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.03 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.03 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.04 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.08 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 362 525
IPR007066 RNA_pol_Rpb1_3 529 688
IPR007080 RNA_pol_Rpb1_1 14 360
IPR007073 RNA_pol_Rpb1_7 1118 1253
IPR007081 RNA_pol_Rpb1_5 1079 1374
IPR007081 RNA_pol_Rpb1_5 826 892
IPR007083 RNA_pol_Rpb1_4 717 819
IPR007075 RNA_pol_Rpb1_6 893 1075
IPR000684 RNA_pol_II_repeat_euk 1662 1675
IPR000684 RNA_pol_II_repeat_euk 1676 1689
IPR000684 RNA_pol_II_repeat_euk 1570 1582
IPR000684 RNA_pol_II_repeat_euk 1623 1634
IPR000684 RNA_pol_II_repeat_euk 1520 1531
IPR000684 RNA_pol_II_repeat_euk 1534 1545
IPR000684 RNA_pol_II_repeat_euk 1597 1610
IPR000684 RNA_pol_II_repeat_euk 1690 1701
IPR000684 RNA_pol_II_repeat_euk 1583 1596
IPR000684 RNA_pol_II_repeat_euk 1576 1589
IPR000684 RNA_pol_II_repeat_euk 1590 1603
IPR000684 RNA_pol_II_repeat_euk 1629 1641
IPR000684 RNA_pol_II_repeat_euk 1555 1566
No external refs found!