Description : RNA polymerase, alpha subunit;RNA polymerase Rpb1, domain 3;RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1, domain 7;RNA polymerase Rpb1, domain 5;RNA polymerase Rpb1, domain 5;RNA polymerase Rpb1, domain 4;RNA polymerase Rpb1, domain 6;RNA polymerase II, heptapeptide repeat, eukaryotic
Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: POW02026 | |
Cluster | HCCA: Cluster_59 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AFR95654 | No alias | DNA-directed RNA polymerase II subunit RPB1;RNA... | 0.07 | OF | |
AFR96255 | No alias | DNA-directed RNA polymerase III subunit RPC1;RNA... | 0.03 | OF | |
AOA68763 | No alias | RNA polymerase Rpb1, domain 6 | 0.04 | OF | |
AOA70277 | No alias | RNA polymerase Rpb1, domain 5 | 0.05 | OF | |
CAG82229 | No alias | RNA polymerase Rpb1, domain 6 | 0.03 | OF | |
CAG82462 | No alias | RNA polymerase Rpb1, domain 5 | 0.02 | OF | |
CAK37321 | No alias | RNA polymerase Rpb1 C-terminal repeat | 0.05 | OF | |
CAK96852 | No alias | RNA polymerase Rpb1, domain 3 | 0.02 | OF | |
CBF87003 | No alias | hypothetical protein similar to RNA polymerase III | 0.04 | OF | |
EAA27335 | No alias | RNA polymerase Rpb1, domain 5 | 0.02 | OF | |
EAA34861 | No alias | RNA polymerase Rpb1, domain 3 | 0.04 | OF | |
EAL90799 | No alias | DNA-dependent RNA polymerase II largest subunit, putative | 0.03 | OF | |
EAL92151 | No alias | DNA-directed RNA polymerase III largest subunit, putative | 0.05 | OF | |
EAU80581 | No alias | DNA-directed RNA polymerase III largest subunit | 0.04 | OF | |
EAU93247 | No alias | RNA polymerase II large subunit | 0.04 | OF | |
EDO03447 | No alias | RNA polymerase, alpha subunit | 0.09 | OF | |
EED85755 | No alias | RNA polymerase Rpb1, domain 7 | 0.04 | OF | |
EGR47538 | No alias | RNA polymerase Rpb1, domain 1 | 0.02 | OF | |
EGR49933 | No alias | RNA polymerase Rpb1, domain 5 | 0.04 | OF | |
EJF58827 | No alias | RNA polymerase Rpb1, domain 3 | 0.04 | OF | |
ESU06166 | No alias | DNA-directed RNA polymerase II largest subunit | 0.02 | OF | |
ESU16499 | No alias | DNA-directed RNA polymerase III largest subunit | 0.03 | OF | |
KHC69799 | No alias | DNA-directed RNA polymerase II subunit RPB1;"RNA... | 0.02 | OF | |
KHC76777 | No alias | DNA-directed RNA polymerase III subunit RPC1;"RNA... | 0.02 | OF | |
MGG_04477T0 | No alias | DNA-directed RNA polymerase III subunit RPC1... | 0.06 | OF | |
MGG_04652T0 | No alias | DNA-directed RNA polymerase II largest subunit... | 0.03 | OF | |
SPBC651.08c.1 | No alias | DNA-directed RNA polymerase III complex large subunit... | 0.03 | OF | |
YDL140C | No alias | RNA polymerase II largest subunit B220; part of central... | 0.04 | OF | |
YOR116C | No alias | RNA polymerase III largest subunit C160; part of core... | 0.08 | OF |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
BP | GO:0006366 | transcription by RNA polymerase II | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000722 | RNA_pol_asu | 362 | 525 |
IPR007066 | RNA_pol_Rpb1_3 | 529 | 688 |
IPR007080 | RNA_pol_Rpb1_1 | 14 | 360 |
IPR007073 | RNA_pol_Rpb1_7 | 1118 | 1253 |
IPR007081 | RNA_pol_Rpb1_5 | 1079 | 1374 |
IPR007081 | RNA_pol_Rpb1_5 | 826 | 892 |
IPR007083 | RNA_pol_Rpb1_4 | 717 | 819 |
IPR007075 | RNA_pol_Rpb1_6 | 893 | 1075 |
IPR000684 | RNA_pol_II_repeat_euk | 1662 | 1675 |
IPR000684 | RNA_pol_II_repeat_euk | 1676 | 1689 |
IPR000684 | RNA_pol_II_repeat_euk | 1570 | 1582 |
IPR000684 | RNA_pol_II_repeat_euk | 1623 | 1634 |
IPR000684 | RNA_pol_II_repeat_euk | 1520 | 1531 |
IPR000684 | RNA_pol_II_repeat_euk | 1534 | 1545 |
IPR000684 | RNA_pol_II_repeat_euk | 1597 | 1610 |
IPR000684 | RNA_pol_II_repeat_euk | 1690 | 1701 |
IPR000684 | RNA_pol_II_repeat_euk | 1583 | 1596 |
IPR000684 | RNA_pol_II_repeat_euk | 1576 | 1589 |
IPR000684 | RNA_pol_II_repeat_euk | 1590 | 1603 |
IPR000684 | RNA_pol_II_repeat_euk | 1629 | 1641 |
IPR000684 | RNA_pol_II_repeat_euk | 1555 | 1566 |
No external refs found! |