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  5. AOA68763

AOA68763


Description : RNA polymerase Rpb1, domain 6


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AOA68763
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.12 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.02 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.08 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.06 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.02 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.02 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.05 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.07 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.03 OF
EAU93247 No alias RNA polymerase II large subunit 0.12 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.02 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.02 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.03 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.1 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.06 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.04 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.02 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.04 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.04 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.01 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.05 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.14 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.06 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 808 1399
IPR007080 RNA_pol_Rpb1_1 12 341
IPR007066 RNA_pol_Rpb1_3 511 669
IPR007073 RNA_pol_Rpb1_7 1143 1277
IPR000722 RNA_pol_asu 343 508
IPR000684 RNA_pol_II_repeat_euk 1638 1651
IPR000684 RNA_pol_II_repeat_euk 1694 1707
IPR000684 RNA_pol_II_repeat_euk 1652 1665
IPR000684 RNA_pol_II_repeat_euk 1624 1637
IPR000684 RNA_pol_II_repeat_euk 1680 1693
IPR000684 RNA_pol_II_repeat_euk 1568 1581
IPR000684 RNA_pol_II_repeat_euk 1666 1679
IPR000684 RNA_pol_II_repeat_euk 1554 1567
IPR000684 RNA_pol_II_repeat_euk 1610 1623
IPR000684 RNA_pol_II_repeat_euk 1708 1721
IPR000684 RNA_pol_II_repeat_euk 1541 1553
IPR000684 RNA_pol_II_repeat_euk 1722 1735
IPR000684 RNA_pol_II_repeat_euk 1582 1595
IPR000684 RNA_pol_II_repeat_euk 1596 1609
IPR000684 RNA_pol_II_repeat_euk 1527 1539
IPR007083 RNA_pol_Rpb1_4 697 801
IPR007075 RNA_pol_Rpb1_6 874 1058
No external refs found!