Description : pre-mRNA-processing-splicing factor 8;RNA recognition motif of the spliceosomal PrP8;U5-snRNA binding site 2 of PrP8;PROCN (NUC071) domain;PRO8NT (NUC069), PrP8 N-terminal domain;PROCT (NUC072) domain;U6-snRNA interacting domain of PrP8;PRP8 domain IV core
Gene families : OG_03_0001356 (OF) Phylogenetic Tree(s): OG0001356_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AFR92284 | |
Cluster | HCCA: Cluster_39 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
CAG81996 | No alias | PROCN domain | 0.03 | OF | |
CAK39557 | No alias | RNA recognition motif of the spliceosomal PrP8 | 0.02 | OF | |
EAL87400 | No alias | pre-mRNA splicing factor (Prp8), putative | 0.03 | OF | |
EAU86045 | No alias | pre-mRNA-processing-splicing factor | 0.03 | OF | |
EDO00734 | No alias | PROCT domain | 0.03 | OF | |
EDO00735 | No alias | PROCN domain | 0.03 | OF | |
EGR48671 | No alias | PRO8NT domain | 0.05 | OF | |
ESU07986 | No alias | pre-mRNA-processing-splicing factor 8 | 0.04 | OF | |
MGG_05244T0 | No alias | Pre-mRNA-processing-splicing factor 8... | 0.03 | OF | |
POV99819 | No alias | PROCN domain | 0.03 | OF | |
SPAC4F8.12c.1 | No alias | U5 snRNP complex subunit Spp42 [Source:PomBase;Acc:SPAC4F8.12c] | 0.03 | OF | |
YHR165C | No alias | Component of U4/U6-U5 snRNP complex; involved in second... | 0.02 | OF |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000398 | mRNA splicing, via spliceosome | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
MF | GO:0017070 | U6 snRNA binding | IEA | Interproscan |
MF | GO:0030623 | U5 snRNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR019582 | RRM_spliceosomal_PrP8 | 1008 | 1098 |
IPR019581 | Prp8_U5-snRNA-bd | 1233 | 1366 |
IPR012592 | PROCN | 418 | 823 |
IPR012591 | PRO8NT | 70 | 221 |
IPR012984 | PROCT | 2409 | 2528 |
IPR019580 | Prp8_U6-snRNA-bd | 1467 | 1531 |
IPR019580 | Prp8_U6-snRNA-bd | 1664 | 1795 |
IPR021983 | PRP8_domainIV | 1955 | 2184 |
No external refs found! |