AFR92284


Description : pre-mRNA-processing-splicing factor 8;RNA recognition motif of the spliceosomal PrP8;U5-snRNA binding site 2 of PrP8;PROCN (NUC071) domain;PRO8NT (NUC069), PrP8 N-terminal domain;PROCT (NUC072) domain;U6-snRNA interacting domain of PrP8;PRP8 domain IV core


Gene families : OG_03_0001356 (OF) Phylogenetic Tree(s): OG0001356_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AFR92284
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
CAG81996 No alias PROCN domain 0.03 OF
CAK39557 No alias RNA recognition motif of the spliceosomal PrP8 0.02 OF
EAL87400 No alias pre-mRNA splicing factor (Prp8), putative 0.03 OF
EAU86045 No alias pre-mRNA-processing-splicing factor 0.03 OF
EDO00734 No alias PROCT domain 0.03 OF
EDO00735 No alias PROCN domain 0.03 OF
EGR48671 No alias PRO8NT domain 0.05 OF
ESU07986 No alias pre-mRNA-processing-splicing factor 8 0.04 OF
MGG_05244T0 No alias Pre-mRNA-processing-splicing factor 8... 0.03 OF
POV99819 No alias PROCN domain 0.03 OF
SPAC4F8.12c.1 No alias U5 snRNP complex subunit Spp42 [Source:PomBase;Acc:SPAC4F8.12c] 0.03 OF
YHR165C No alias Component of U4/U6-U5 snRNP complex; involved in second... 0.02 OF

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR019582 RRM_spliceosomal_PrP8 1008 1098
IPR019581 Prp8_U5-snRNA-bd 1233 1366
IPR012592 PROCN 418 823
IPR012591 PRO8NT 70 221
IPR012984 PROCT 2409 2528
IPR019580 Prp8_U6-snRNA-bd 1467 1531
IPR019580 Prp8_U6-snRNA-bd 1664 1795
IPR021983 PRP8_domainIV 1955 2184
No external refs found!