AFR92284

Description : pre-mRNA-processing-splicing factor 8;RNA recognition motif of the spliceosomal PrP8;U5-snRNA binding site 2 of PrP8;PROCN (NUC071) domain;PRO8NT (NUC069), PrP8 N-terminal domain;PROCT (NUC072) domain;U6-snRNA interacting domain of PrP8;PRP8 domain IV core

Gene families : OG_03_0001356 (OF) Phylogenetic Tree(s): OG0001356_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AFR92284
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
CAG81996	No alias	PROCN domain	0.03	OF
CAK39557	No alias	RNA recognition motif of the spliceosomal PrP8	0.02	OF
EAL87400	No alias	pre-mRNA splicing factor (Prp8), putative	0.03	OF
EAU86045	No alias	pre-mRNA-processing-splicing factor	0.03	OF
EDO00734	No alias	PROCT domain	0.03	OF
EDO00735	No alias	PROCN domain	0.03	OF
EGR48671	No alias	PRO8NT domain	0.05	OF
ESU07986	No alias	pre-mRNA-processing-splicing factor 8	0.04	OF
MGG_05244T0	No alias	Pre-mRNA-processing-splicing factor 8...	0.03	OF
POV99819	No alias	PROCN domain	0.03	OF
SPAC4F8.12c.1	No alias	U5 snRNP complex subunit Spp42 [Source:PomBase;Acc:SPAC4F8.12c]	0.03	OF
YHR165C	No alias	Component of U4/U6-U5 snRNP complex; involved in second...	0.02	OF

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	IEA	Interproscan
MF	GO:0030623	U5 snRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR019582	RRM_spliceosomal_PrP8	1008	1098
IPR019581	Prp8_U5-snRNA-bd	1233	1366
IPR012592	PROCN	418	823
IPR012591	PRO8NT	70	221
IPR012984	PROCT	2409	2528
IPR019580	Prp8_U6-snRNA-bd	1467	1531
IPR019580	Prp8_U6-snRNA-bd	1664	1795
IPR021983	PRP8_domainIV	1955	2184

External Links

No external refs found!

AFR92284

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation