KHC78933

Description : protein Clp1;Pre-mRNA cleavage complex II protein Clp1;N-terminal beta-sandwich domain of polyadenylation factor;mRNA cleavage and polyadenylation factor CLP1 P-loop

Gene families : OG_03_0003824 (OF) Phylogenetic Tree(s): OG0003824_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KHC78933
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method	Actions
AOA68260	No alias	Pre-mRNA cleavage complex subunit Clp1, C-terminal	0.03	OF
CAK43259	No alias	N-terminal beta-sandwich domain of polyadenylation factor	0.02	OF

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010655	Clp1_C	356	489
IPR032324	Clp1_N	23	126
IPR032319	CLP1_P	149	350

External Links

No external refs found!

KHC78933

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation