Description : RNA helicase (UPF2 interacting domain)

Gene families : OG_03_0000143 (OF) Phylogenetic Tree(s): OG0000143_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CAK45574
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
CAG81409 No alias RNA helicase UPF1, UPF2-interacting domain 0.04 OF
EAA31997 No alias DNA2/NAM7 helicase, AAA domain 0.09 OF
EAL90638 No alias regulator of nonsense transcripts, putative 0.06 OF
EAU88694 No alias ATP dependent helicase 0.03 OF
EDN91568 No alias DNA2/NAM7 helicase-like, AAA domain 0.03 OF
ESU16575 No alias ATP-dependent helicase NAM7 0.07 OF
KHC70522 No alias hypothetical protein;AAA domain 0.03 OF
KHC74964 No alias hypothetical protein;AAA domain;RNA helicase (UPF2... 0.02 OF
MGG_00976T0 No alias Regulator-nonsense transcripts 1... 0.04 OF
YMR080C No alias ATP-dependent RNA helicase of the SFI superfamily;... 0.03 OF

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR018999 RNA-helicase_UPF1_UPF2-interct 64 215
IPR041677 DNA2/NAM7_AAA_11 523 621
IPR041677 DNA2/NAM7_AAA_11 419 520
IPR041679 DNA2/NAM7-like_AAA 628 824
IPR040812 DUF5599 268 362
No external refs found!