YLR222C

Description : Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [Source:SGD;Acc:S000004212]

Gene families : OG_03_0002459 (OF) Phylogenetic Tree(s): OG0002459_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: YLR222C
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
AFR93710	No alias	U3 small nucleolar RNA-associated protein 13;WD domain,...	0.26	OF
AOA68420	No alias	Small-subunit processome, Utp13	0.16	OF
CAG80271	No alias	WD40 repeat	0.32	OF
CAL00677	No alias	WD domain, G-beta repeat	0.32	OF
CBF77475	No alias	small nucleolar ribonucleoprotein complex subunit, putative	0.12	OF
EAA32119	No alias	WD40 repeat	0.32	OF
EAL90033	No alias	small nucleolar ribonucleoprotein complex subunit, putative	0.33	OF
EAU92527	No alias	U3 small nucleolar RNA-associated protein	0.12	OF
EDO00229	No alias	WD40 repeat	0.23	OF
EGR52575	No alias	Small-subunit processome, Utp13	0.31	OF
ESU12932	No alias	WD40 repeat	0.25	OF
KHC75155	No alias	U3 small nucleolar RNA-associated protein 13;"WD domain,...	0.36	OF
MGG_08178T0	No alias	U3 small nucleolar RNA-associated protein 13...	0.22	OF
POW15337	No alias	WD40 repeat	0.16	OF
SPCC16A11.02.1	No alias	U3 snoRNP-associated protein Utp13 (predicted)...	0.1	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	383	415
IPR001680	WD40_repeat	607	645
IPR001680	WD40_repeat	137	176
IPR001680	WD40_repeat	527	561
IPR001680	WD40_repeat	180	224
IPR001680	WD40_repeat	567	603
IPR001680	WD40_repeat	488	519
IPR013934	SSU_processome_Utp13	666	813

External Links

No external refs found!

YLR222C

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation