SPCC16A11.02.1

Description : U3 snoRNP-associated protein Utp13 (predicted) [Source:PomBase;Acc:SPCC16A11.02]

Gene families : OG_03_0002459 (OF) Phylogenetic Tree(s): OG0002459_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SPCC16A11.02.1
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AFR93710	No alias	U3 small nucleolar RNA-associated protein 13;WD domain,...	0.08	OF
AOA68420	No alias	Small-subunit processome, Utp13	0.05	OF
CAG80271	No alias	WD40 repeat	0.09	OF
CAL00677	No alias	WD domain, G-beta repeat	0.11	OF
EAA32119	No alias	WD40 repeat	0.1	OF
EAL90033	No alias	small nucleolar ribonucleoprotein complex subunit, putative	0.1	OF
EAU92527	No alias	U3 small nucleolar RNA-associated protein	0.07	OF
EDO00229	No alias	WD40 repeat	0.07	OF
EGR52575	No alias	Small-subunit processome, Utp13	0.07	OF
ESU12932	No alias	WD40 repeat	0.1	OF
KHC75155	No alias	U3 small nucleolar RNA-associated protein 13;"WD domain,...	0.13	OF
MGG_08178T0	No alias	U3 small nucleolar RNA-associated protein 13...	0.05	OF
POW15337	No alias	WD40 repeat	0.07	OF
YLR222C	No alias	Nucleolar protein; component of the small subunit (SSU)...	0.1	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	498	535
IPR001680	WD40_repeat	458	493
IPR001680	WD40_repeat	138	175
IPR001680	WD40_repeat	540	577
IPR001680	WD40_repeat	182	217
IPR001680	WD40_repeat	581	619
IPR001680	WD40_repeat	95	131
IPR001680	WD40_repeat	401	440
IPR001680	WD40_repeat	357	392
IPR013934	SSU_processome_Utp13	640	777

External Links

No external refs found!