SPAC1F3.01.1

Description : exosome 3'-5' exoribonuclease subunit Rrp6 (predicted) [Source:PomBase;Acc:SPAC1F3.01]

Gene families : OG_03_0003746 (OF) Phylogenetic Tree(s): OG0003746_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SPAC1F3.01.1
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AFR93919	No alias	exosome complex exonuclease RRP6;3'-5'...	0.06	OF
AOA66858	No alias	HRDC domain	0.07	OF
CAG79122	No alias	HRDC domain	0.13	OF
CAK42852	No alias	PMC2NT (NUC016) domain	0.13	OF
EAA30664	No alias	Exosome-associated factor Rrp6, N-terminal	0.08	OF
EAL92593	No alias	exosome complex exonuclease Rrp6, putative	0.11	OF
EED79945	No alias	3'-5' exonuclease domain	0.03	OF
EGR49168	No alias	HRDC domain	0.17	OF
EJF62098	No alias	PMC2NT (NUC016) domain	0.03	OF
ESU12093	No alias	3'-5' exonuclease domain	0.13	OF
KHC83281	No alias	exosome complex exonuclease RRP6;3'-5'...	0.13	OF
MGG_00896T0	No alias	Exosome complex exonuclease Rrp...	0.14	OF
YOR001W	No alias	Nuclear exosome exonuclease component; has 3'-5'...	0.08	OF

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEA	Interproscan
CC	GO:0000178	exosome (RNase complex)	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012588	Exosome-assoc_fac_Rrp6_N	12	98
IPR002121	HRDC_dom	446	512
IPR002562	3'-5'_exonuclease_dom	219	385

External Links

No external refs found!

SPAC1F3.01.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation