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  5. CAG81409

CAG81409


Description : RNA helicase UPF1, UPF2-interacting domain


Gene families : OG_03_0000143 (OF) Phylogenetic Tree(s): OG0000143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CAG81409
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
CAK45574 No alias RNA helicase (UPF2 interacting domain) 0.04 OF
EAL90638 No alias regulator of nonsense transcripts, putative 0.05 OF
EAU88694 No alias ATP dependent helicase 0.03 OF
EDN91568 No alias DNA2/NAM7 helicase-like, AAA domain 0.06 OF
ESU16575 No alias ATP-dependent helicase NAM7 0.04 OF
MGG_00976T0 No alias Regulator-nonsense transcripts 1... 0.07 OF
SPAC16C9.06c.1 No alias ATP-dependent RNA helicase Upf1 [Source:PomBase;Acc:SPAC16C9.06c] 0.04 OF
YMR080C No alias ATP-dependent RNA helicase of the SFI superfamily;... 0.03 OF

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR040812 DUF5599 262 359
IPR041677 DNA2/NAM7_AAA_11 529 624
IPR041677 DNA2/NAM7_AAA_11 416 522
IPR041679 DNA2/NAM7-like_AAA 632 828
IPR018999 RNA-helicase_UPF1_UPF2-interct 59 205
No external refs found!