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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -3.99 | -2.1 | -3.68 | - | -4.96 | -2.8 | -3.03 | -3.07 | -2.78 | -2.49 | 0.16 | -3.86 | -3.92 | 2.64 | -4.49 | 2.12 | -5.46 | 2.55 | -5.45 | 0.05 | -0.61 | -1.56 | -2.12 | -2.04 | -4.37 | -0.98 | 0.53 | -0.21 | - | -3.15 | - | 1.52 | 0.19 | -0.92 | - | - | -3.51 | -1.08 | 0.26 | 0.87 | 0.14 | 1.43 | -4.08 | -4.44 | 2.52 | -0.41 | -0.74 | -1.09 | -2.9 | -4.27 | - | -1.73 | -4.69 | 2.83 | -0.68 | -1.36 | -0.88 | -0.32 | -0.65 | -1.04 | 1.26 | 0.81 | 1.91 | |
| -2.78 | -2.07 | -2.02 | -0.77 | -1.16 | -0.72 | -0.87 | -0.98 | -1.17 | -1.32 | -0.31 | -1.39 | -1.75 | 1.43 | -1.72 | 1.44 | -1.77 | 1.6 | -1.5 | -0.09 | -1.26 | -1.54 | -0.33 | -0.89 | -0.84 | -1.45 | 2.06 | -1.06 | -1.68 | -1.78 | -1.52 | 1.54 | 0.14 | -0.92 | -1.75 | -1.63 | -1.96 | -1.39 | -0.31 | 2.08 | -0.77 | 2.74 | -1.28 | -1.74 | 1.59 | -0.24 | -0.55 | -0.57 | -7.22 | -2.71 | -1.61 | -0.22 | -1.53 | 1.3 | -0.64 | -0.79 | -0.65 | -0.78 | -0.97 | 0.09 | 2.05 | -0.37 | 0.36 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.