AFR97124

Description : RNA helicase;Sec63 Brl domain;Helicase conserved C-terminal domain;DEAD/DEAH box helicase

Gene families : OG_03_0000272 (OF) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AFR97124
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AOA66029	No alias	DEAD/DEAH box helicase domain	0.07	OF
CAG78485	No alias	DEAD/DEAH box helicase domain	0.07	OF
CAK47061	No alias	DEAD/DEAH box helicase	0.02	OF
CBF84947	No alias	pre-mRNA splicing helicase, putative	0.03	OF
CBF86944	No alias	DEAD/DEAH box helicase, putative	0.06	OF
EAA36222	No alias	DEAD/DEAH box helicase domain	0.03	OF
EAL84455	No alias	DEAD/DEAH box helicase, putative	0.07	OF
EAL85242	No alias	pre-mRNA splicing helicase, putative	0.07	OF
EAU82983	No alias	DNA polymerase theta/eta	0.03	OF
EAU82984	No alias	pre-mRNA splicing factor	0.02	OF
EAU87449	No alias	hypothetical protein	0.03	OF
EDN98214	No alias	Helicase, C-terminal	0.02	OF
EDO01959	No alias	Sec63 domain	0.04	OF
EGR47626	No alias	DEAD/DEAH box helicase domain	0.07	OF
EGR51750	No alias	DEAD/DEAH box helicase domain	0.03	OF
EJF56655	No alias	No description available	0.03	OF
EJF58137	No alias	N-terminal helicase PWI domain	0.03	OF
KHC75382	No alias	hypothetical protein;Helicase conserved C-terminal...	0.06	OF
KHC76781	No alias	pre-mRNA-splicing helicase BRR2;Sec63 Brl...	0.04	OF
POV98191	No alias	Sec63 domain;DEAD/DEAH box helicase domain	0.02	OF
SPAC9.03c.1	No alias	U5 snRNP complex subunit Brr2 [Source:PomBase;Acc:SPAC9.03c]	0.09	OF
SPBC13G1.10c.1	No alias	ATP-dependent RNA helicase Slh1, human ASCC3 ortholog...	0.05	OF
YER172C	No alias	RNA-dependent ATPase RNA helicase (DEIH box); required...	0.06	OF
YGR271W	No alias	Putative RNA helicase related to Ski2p; involved in...	0.08	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004179	Sec63-dom	817	1123
IPR001650	Helicase_C	593	695
IPR011545	DEAD/DEAH_box_helicase_dom	1169	1310
IPR011545	DEAD/DEAH_box_helicase_dom	309	492

External Links

No external refs found!