YPR042C


Description : PUF family mRNA-binding protein; Pumilio homology domain confers RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins; binding site composed of two UAAU tetranucleotides, separated by a 3-nt linker; PUF2 has a paralog, JSN1, that arose from the whole genome duplication [Source:SGD;Acc:S000006246]


Gene families : OG_03_0002129 (OF) Phylogenetic Tree(s): OG0002129_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YPR042C
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AOA69662 No alias Pumilio RNA-binding repeat 0.05 OF
CAG84190 No alias RNA recognition motif domain 0.02 OF
CAK48825 No alias Pumilio-family RNA binding repeat 0.04 OF
CBF79450 No alias RNA binding protein Jsn1, putative 0.07 OF
EAA33679 No alias RNA recognition motif domain 0.04 OF
EAL87652 No alias RNA binding protein Jsn1, putative 0.07 OF
EED48753 No alias RNA binding protein Jsn1, putative 0.02 OF
EGR52788 No alias RNA recognition motif domain 0.03 OF
ESU13125 No alias RNA recognition motif domain 0.04 OF
MGG_06318T0 No alias Putative uncharacterized protein... 0.02 OF
SPBP35G2.14.1 No alias pumilio family RNA-binding protein Puf2... 0.02 OF

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 338 388
IPR001313 Pumilio_RNA-bd_rpt 577 608
IPR001313 Pumilio_RNA-bd_rpt 615 646
IPR001313 Pumilio_RNA-bd_rpt 686 718
No external refs found!