1. Home
  2. Species
  3. Saccharomyces cerevisiae
  4. Sequence
  5. YNR011C

YNR011C


Description : RNA-dependent DExD/H-box ATPase; required for activation of spliceosome before first transesterification step in RNA splicing; implicated in rearranging and proofreading snRNA structure in catalytic activation of spliceosome; ortholog of human protein DHX16 [Source:SGD;Acc:S000005294]


Gene families : OG_03_0000045 (OF) Phylogenetic Tree(s): OG0000045_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YNR011C
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AFR93170 No alias ATP-dependent RNA helicase DDX35;AAA domain;Helicase... 0.02 OF
AFR95524 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OF
AFR97936 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 OF
AOA65445 No alias Helicase-associated domain 0.05 OF
AOA66220 No alias Helicase, C-terminal 0.08 OF
CAG80826 No alias Domain of unknown function DUF1605 0.02 OF
CAG82909 No alias Helicase, C-terminal 0.03 OF
CAK45228 No alias Helicase associated domain (HA2) 0.02 OF
CAK46614 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 OF
CBF70766 No alias mRNA splicing factor RNA helicase 0.07 OF
CBF74845 No alias mRNA splicing factor RNA helicase 0.02 OF
CBF76926 No alias hypothetical protein similar to ATP dependent helicase 0.02 OF
EAA31559 No alias Helicase-associated domain 0.02 OF
EAA35877 No alias Helicase, C-terminal 0.04 OF
EAL88094 No alias mRNA splicing factor RNA helicase (Prp16), putative 0.03 OF
EAL91525 No alias RNA helicase-like splicing factor (HRH1), putative 0.03 OF
EAL93068 No alias mRNA splicing factor RNA helicase (Cdc28), putative 0.05 OF
EAU85197 No alias ATP-dependent RNA helicase Prp43 0.03 OF
EAU85955 No alias pre-mRNA splicing factor 0.01 OF
EAU93276 No alias pre-mRNA splicing factor 0.02 OF
EDN95366 No alias Helicase, C-terminal 0.03 OF
EDN99006 No alias Helicase-associated domain 0.03 OF
EDO00044 No alias DEAD/DEAH box helicase domain 0.03 OF
EGR45053 No alias Helicase-associated domain 0.04 OF
EGR50716 No alias Helicase, C-terminal 0.07 OF
EJF55621 No alias Helicase conserved C-terminal domain 0.04 OF
EJF57706 No alias DEAD/DEAH box helicase 0.02 OF
ESU05632 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 0.03 OF
ESU10905 No alias ATP-dependent RNA helicase DHX8 0.03 OF
ESU17099 No alias Helicase, C-terminal 0.03 OF
KHC71219 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 OF
KHC75427 No alias ATP-dependent RNA helicase DHX8/PRP22;Helicase... 0.05 OF
MGG_02518T0 No alias ATP-dependent RNA helicase DHX8... 0.02 OF
MGG_08807T0 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OF
MGG_11351T0 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OF
POW10235 No alias Domain of unknown function DUF1605;Helicase,... 0.03 OF
POW17111 No alias Domain of unknown function DUF1605;Helicase,... 0.02 OF
SPAC10F6.02c.1 No alias ATP-dependent RNA helicase Prp22... 0.06 OF
SPAC20H4.09.1 No alias ATP-dependent RNA helicase, spliceosomal (predicted)... 0.03 OF
SPBC19C2.01.1 No alias ATP-dependent RNA helicase Cdc28 [Source:PomBase;Acc:SPBC19C2.01] 0.04 OF

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 619 696
IPR001650 Helicase_C 427 557
IPR011545 DEAD/DEAH_box_helicase_dom 230 385
IPR011709 DUF1605 776 862
No external refs found!