YMR047C


Description : FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier; forms a stable association with Nup82p, Gle2p and two other FG-nucleoporins (Nsp1p and Nup159p); NUP116 has a paralog, NUP100, that arose from the whole genome duplication [Source:SGD;Acc:S000004650]


Gene families : OG_03_0000675 (OF) Phylogenetic Tree(s): OG0000675_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YMR047C
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AFR93115 No alias nuclear pore complex protein Nup98-Nup96;Nucleoporin FG... 0.06 OF
AOA66079 No alias Nucleoporin FG repeat 0.02 OF
AOA67446 No alias Peptidase S59, nucleoporin 0.06 OF
CAG78795 No alias Nucleoporin FG repeat 0.03 OF
CAG81152 No alias Peptidase S59, nucleoporin 0.07 OF
CAK38825 No alias Nuclear protein 96 0.06 OF
CBF81523 No alias Putative uncharacterized proteinSONB 0.05 OF
EAA31174 No alias Peptidase S59, nucleoporin 0.03 OF
EAL89683 No alias nucleoporin SONB, putative 0.05 OF
EDN90941 No alias Nucleoporin FG repeat 0.04 OF
EFI27761 No alias nucleoporin autopeptidase 0.03 OF
EGR44470 No alias Nuclear protein 96 0.02 OF
EJF57390 No alias Nuclear protein 96 0.02 OF
ESU14851 No alias Nucleoporin FG repeat 0.06 OF
KHC76605 No alias hypothetical protein;Nuclear protein 96;Nucleoporin FG... 0.06 OF
KHC79185 No alias nuclear pore complex protein Nup98-Nup96;Nucleoporin FG... 0.02 OF
SPAC1486.05.1 No alias nucleoporin Nup98 and Nup96 [Source:PomBase;Acc:SPAC1486.05] 0.05 OF

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025574 Nucleoporin_FG_rpt 214 291
IPR025574 Nucleoporin_FG_rpt 19 101
IPR025574 Nucleoporin_FG_rpt 359 442
IPR025574 Nucleoporin_FG_rpt 560 651
IPR007230 Peptidase_S59 968 1108
No external refs found!