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YGL178W


Description : mRNA-binding protein of the PUF family; binds to specific mRNAs, often in the 3' UTR; has broad specificity and binds to more than 1000 mRNAs (16% of the transcriptome); recruits the CCR4-NOT deadenylase complex to mRNAs along with Dhh1p and Dcp1p to promote deadenylation, decapping, and decay; also interacts with the Caf20p translational initiation repressor, affecting its mRNA target specificity [Source:SGD;Acc:S000003146]


Gene families : OG_03_0000635 (OF) Phylogenetic Tree(s): OG0000635_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: YGL178W
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
CAG79369 No alias Pumilio RNA-binding repeat 0.02 OF
CAK43737 No alias Pumilio-family RNA binding repeat 0.02 OF
CAK43738 No alias No description available 0.02 OF
CBF89730 No alias RNA-binding protein, putative 0.02 OF
EGR48068 No alias No description available 0.03 OF
KHC80022 No alias hypothetical protein;Pumilio-family RNA binding repeat 0.03 OF
SPAC6G9.14.1 No alias pumilio family RNA-binding protein Puf4 (predicted)... 0.03 OF

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 440 472
IPR001313 Pumilio_RNA-bd_rpt 329 361
IPR001313 Pumilio_RNA-bd_rpt 216 244
IPR001313 Pumilio_RNA-bd_rpt 285 319
IPR001313 Pumilio_RNA-bd_rpt 367 398
IPR001313 Pumilio_RNA-bd_rpt 402 426
IPR001313 Pumilio_RNA-bd_rpt 249 282
No external refs found!