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  5. YGL120C

YGL120C


Description : RNA helicase in the DEAH-box family; functions in both RNA polymerase I and polymerase II transcript metabolism; catalyzes removal of U2, U5, and U6 snRNPs from the postsplicing lariat-intron ribonucleoprotein complex; required for efficient biogenesis of both small- and large-subunit rRNAs; acts with Sqs1p to promote 20S to 18S rRNA processing catalyzed by endonuclease Nob1p [Source:SGD;Acc:S000003088]


Gene families : OG_03_0000045 (OF) Phylogenetic Tree(s): OG0000045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: YGL120C
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AFR92854 No alias ATP-dependent RNA helicase... 0.03 OF
AFR95911 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.16 OF
AOA66148 No alias DEAD/DEAH box helicase domain 0.04 OF
AOA68590 No alias DEAD/DEAH box helicase domain 0.02 OF
CAG83032 No alias DEAD/DEAH box helicase domain 0.16 OF
CAG83191 No alias Helicase-associated domain 0.17 OF
CAK41148 No alias Helicase conserved C-terminal domain 0.17 OF
CAK48696 No alias Helicase associated domain (HA2) 0.19 OF
CBF70215 No alias ATP-dependent RNA helicase 0.01 OF
CBF90134 No alias pre-mRNA splicing factor RNA helicase 0.13 OF
EAA27287 No alias DEAD/DEAH box helicase domain 0.2 OF
EAA35453 No alias Domain of unknown function DUF1605 0.02 OF
EAL91450 No alias pre-mRNA splicing factor RNA helicase (Prp43), putative 0.18 OF
EAU86151 No alias ATP-dependent RNA helicase Prh1 0.11 OF
EDN93703 No alias Helicase-associated domain 0.16 OF
EGR48593 No alias Helicase-associated domain 0.15 OF
EGR50545 No alias Helicase, C-terminal 0.17 OF
EJF57706 No alias DEAD/DEAH box helicase 0.06 OF
EJF61056 No alias Helicase conserved C-terminal domain 0.14 OF
ESU06663 No alias Domain of unknown function DUF1605 0.07 OF
ESU18026 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 0.2 OF
KHC73257 No alias ATP-dependent RNA helicase... 0.15 OF
KHC80102 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.2 OF
MGG_02518T0 No alias ATP-dependent RNA helicase DHX8... 0.02 OF
MGG_03893T0 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.07 OF
MGG_07501T0 No alias ATP-dependent RNA helicase DHX8... 0.02 OF
POW02177 No alias Helicase-associated domain;Domain of unknown function... 0.04 OF
POW12867 No alias Helicase-associated domain;Helicase, C-terminal;Domain... 0.04 OF
POW17111 No alias Domain of unknown function DUF1605;Helicase,... 0.02 OF
SPAC10F6.02c.1 No alias ATP-dependent RNA helicase Prp22... 0.02 OF
SPAC2G11.11c.1 No alias ATP-dependent RNA helicase Prh1 (predicted)... 0.05 OF
SPBC16H5.10c.1 No alias ATP-dependent RNA helicase Prp43... 0.14 OF
SPBC19C2.01.1 No alias ATP-dependent RNA helicase Cdc28 [Source:PomBase;Acc:SPBC19C2.01] 0.03 OF

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 102 254
IPR007502 Helicase-assoc_dom 494 582
IPR011709 DUF1605 648 725
IPR001650 Helicase_C 293 431
No external refs found!