SPCC1902.01.1

Description : transcription factor Gaf1 [Source:PomBase;Acc:SPCC1902.01]

Gene families : OG_03_0000117 (OF) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SPCC1902.01.1
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
CAG81266	No alias	Zinc finger, GATA-type	0.08	OF
CAG82468	No alias	Zinc finger, GATA-type	0.06	OF
CAK43607	No alias	GATA zinc finger	0.02	OF
CBF90036	No alias	Putative uncharacterized proteinSiderophore biosynthesis...	0.02	OF
EAL91485	No alias	siderophore transcription factor SreA	0.03	OF
EAU87922	No alias	GATA-binding factor 6-B	0.02	OF
EAU89984	No alias	Zinc finger, GATA-type	0.04	OF
EDO02564	No alias	Zinc finger, GATA-type	0.02	OF
EFI27811	No alias	transcription factor GATA-4	0.02	OF
EGR49800	No alias	Zinc finger, GATA-type	0.03	OF
ESU10986	No alias	GATA type zinc finger protein Asd4	0.03	OF
ESU14684	No alias	nitrogen regulatory protein areA	0.03	OF
ESU16170	No alias	Zinc finger, GATA-type	0.02	OF
KHC71243	No alias	GATA-binding protein, other eukaryote;GATA zinc finger	0.02	OF
KHC76665	No alias	GATA type zinc finger protein asd-4;GATA zinc...	0.03	OF
POV95296	No alias	Zinc finger, GATA-type	0.02	OF
YFL021W	No alias	Transcriptional activator of nitrogen catabolite...	0.03	OF
YKR034W	No alias	Negative regulator of genes in multiple nitrogen...	0.06	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	635	668
IPR013860	AreA_GATA	41	67

External Links

No external refs found!

SPCC1902.01.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation