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  5. SPBC19C2.01.1

SPBC19C2.01.1


Description : ATP-dependent RNA helicase Cdc28 [Source:PomBase;Acc:SPBC19C2.01]


Gene families : OG_03_0000045 (OF) Phylogenetic Tree(s): OG0000045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SPBC19C2.01.1
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AFR93170 No alias ATP-dependent RNA helicase DDX35;AAA domain;Helicase... 0.03 OF
AFR95524 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 OF
AOA65445 No alias Helicase-associated domain 0.02 OF
AOA66220 No alias Helicase, C-terminal 0.03 OF
AOA68590 No alias DEAD/DEAH box helicase domain 0.03 OF
CAG80826 No alias Domain of unknown function DUF1605 0.03 OF
CAG82909 No alias Helicase, C-terminal 0.09 OF
CAG83003 No alias Helicase, C-terminal 0.02 OF
CAG83032 No alias DEAD/DEAH box helicase domain 0.05 OF
CAK41148 No alias Helicase conserved C-terminal domain 0.03 OF
CAK44849 No alias Helicase associated domain (HA2) 0.03 OF
CAK45228 No alias Helicase associated domain (HA2) 0.03 OF
CAK46614 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.04 OF
CAK48696 No alias Helicase associated domain (HA2) 0.03 OF
CAK97428 No alias Helicase associated domain (HA2) 0.02 OF
CBF70766 No alias mRNA splicing factor RNA helicase 0.05 OF
CBF74845 No alias mRNA splicing factor RNA helicase 0.04 OF
CBF76926 No alias hypothetical protein similar to ATP dependent helicase 0.02 OF
CBF90134 No alias pre-mRNA splicing factor RNA helicase 0.03 OF
EAA27287 No alias DEAD/DEAH box helicase domain 0.03 OF
EAA31559 No alias Helicase-associated domain 0.03 OF
EAA33344 No alias Helicase-associated domain 0.04 OF
EAA35877 No alias Helicase, C-terminal 0.06 OF
EAL91450 No alias pre-mRNA splicing factor RNA helicase (Prp43), putative 0.05 OF
EAL91525 No alias RNA helicase-like splicing factor (HRH1), putative 0.06 OF
EAL93068 No alias mRNA splicing factor RNA helicase (Cdc28), putative 0.06 OF
EAU85197 No alias ATP-dependent RNA helicase Prp43 0.03 OF
EAU85955 No alias pre-mRNA splicing factor 0.05 OF
EAU92580 No alias ATP-dependent RNA helicase DHX8 0.03 OF
EDN93703 No alias Helicase-associated domain 0.03 OF
EDN95366 No alias Helicase, C-terminal 0.07 OF
EDN99006 No alias Helicase-associated domain 0.08 OF
EDO00044 No alias DEAD/DEAH box helicase domain 0.03 OF
EED79978 No alias No description available 0.02 OF
EED80851 No alias S1 domain 0.02 OF
EGR45053 No alias Helicase-associated domain 0.05 OF
EGR48593 No alias Helicase-associated domain 0.04 OF
EGR50545 No alias Helicase, C-terminal 0.05 OF
EGR50716 No alias Helicase, C-terminal 0.04 OF
EJF55621 No alias Helicase conserved C-terminal domain 0.05 OF
EJF57706 No alias DEAD/DEAH box helicase 0.05 OF
EJF61056 No alias Helicase conserved C-terminal domain 0.03 OF
ESU05632 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 0.04 OF
ESU06663 No alias Domain of unknown function DUF1605 0.02 OF
ESU10905 No alias ATP-dependent RNA helicase DHX8 0.04 OF
ESU17099 No alias Helicase, C-terminal 0.05 OF
ESU18026 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 0.03 OF
KHC71219 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.05 OF
KHC73257 No alias ATP-dependent RNA helicase... 0.04 OF
KHC78967 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase-like... 0.02 OF
KHC80102 No alias pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OF
MGG_02518T0 No alias ATP-dependent RNA helicase DHX8... 0.04 OF
MGG_03893T0 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OF
MGG_07501T0 No alias ATP-dependent RNA helicase DHX8... 0.05 OF
MGG_08807T0 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OF
MGG_11351T0 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OF
POW10235 No alias Domain of unknown function DUF1605;Helicase,... 0.04 OF
POW12867 No alias Helicase-associated domain;Helicase, C-terminal;Domain... 0.03 OF
POW17111 No alias Domain of unknown function DUF1605;Helicase,... 0.09 OF
YER013W No alias DEAH-box RNA-dependent ATPase/ATP-dependent RNA... 0.05 OF
YGL120C No alias RNA helicase in the DEAH-box family; functions in both... 0.03 OF
YKL078W No alias Predominantly nucleolar DEAH-box ATP-dependent RNA... 0.03 OF
YKR086W No alias DEAH-box RNA helicase involved in second catalytic step... 0.05 OF
YNR011C No alias RNA-dependent DExD/H-box ATPase; required for activation... 0.04 OF

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 617 749
IPR011545 DEAD/DEAH_box_helicase_dom 428 575
IPR007502 Helicase-assoc_dom 811 900
IPR011709 DUF1605 959 1037
No external refs found!