Heatmap: Cluster_82 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-0.63 -0.24 -0.2 0.16 0.26 1.25 -0.34 0.81 0.01 0.22 -0.91 -1.37 -1.13 -0.03 -1.01 0.71 -0.8 0.61 -1.16 0.65 0.96 - - - - - 0.3 0.28 -0.07 0.31 -1.27 0.58 0.56 0.48 -0.0 0.49 -0.69 0.69 0.98 -0.65 -0.44 0.14 -1.56 -0.73 0.79 0.24 0.54 0.52 -4.42 -2.79 -3.12 -2.48 -0.82 1.0 0.83 1.4 0.71 0.54 -0.09 0.07 0.08 0.16 -0.47
-5.54 -6.81 -5.81 -3.15 -1.53 -0.92 -0.89 -1.16 -2.54 -2.32 -1.85 2.89 1.58 -5.18 0.88 -5.58 1.34 -5.05 0.75 -2.48 -5.07 -0.56 -0.32 0.61 0.59 1.05 -1.27 -1.97 2.03 2.1 0.98 -4.78 -1.74 -5.32 1.81 1.66 -1.36 -5.09 -2.28 -3.55 -1.6 -1.78 2.43 1.49 -4.75 -2.08 -2.56 -2.48 -4.72 -3.83 -2.1 -1.31 2.76 -3.58 -2.54 -0.58 -5.3 -3.55 -5.37 -3.25 -7.61 -3.91 -4.45
-2.24 -2.04 -2.14 -0.22 -0.67 -0.78 -1.4 -0.54 -1.53 -0.77 -0.76 0.96 0.82 0.91 0.4 0.37 0.96 0.93 0.43 0.66 -0.96 0.12 0.53 -2.4 -0.2 -1.09 -0.17 -0.12 1.55 1.46 0.31 0.63 0.34 -0.23 1.14 1.13 -0.78 -1.49 -0.96 -1.0 -1.66 0.07 1.19 0.36 1.07 0.08 1.08 0.87 -3.93 -7.88 -4.71 -6.66 1.4 -0.16 -1.77 -0.65 -2.12 -1.66 -1.41 -1.3 -1.18 -1.53 -0.71
-0.06 0.09 2.08 - -0.17 -1.19 0.67 0.93 0.41 0.3 0.33 -0.52 -1.18 - -0.14 1.69 0.47 - - - - 0.04 0.93 -0.01 -0.03 1.25 1.04 - - 1.23 - -0.74 - 0.84 0.18 -0.73 -0.76 2.09 - - 1.42 -0.16 0.26 -0.05 -0.74 0.22 1.29 - - - - - 2.15 0.72 - 0.17 - - - 0.84 0.87 - -
2.0 0.91 0.33 -0.54 -0.59 -0.55 -0.27 -1.21 -1.8 -0.02 0.17 1.9 0.48 0.58 1.01 -0.07 -0.4 -0.06 -0.51 -2.87 -1.35 2.35 1.78 -0.24 2.18 -1.3 -0.09 -0.93 -0.6 0.68 -0.66 -0.93 -1.92 -1.91 1.02 0.42 1.18 -1.65 -2.9 - -1.33 -0.91 0.68 0.45 -1.16 -0.93 -2.48 -2.5 - - - - 1.01 -0.68 -1.89 - -1.88 -0.72 -0.96 -0.32 -1.3 -0.88 -0.9
1.71 0.05 0.31 -0.36 -1.82 -2.12 -0.95 -1.29 -1.41 -1.51 0.2 0.92 0.13 -1.13 0.19 0.02 0.46 -0.56 0.36 -0.8 -0.7 2.76 2.59 0.65 2.07 0.26 -0.98 -0.43 -0.24 0.87 0.25 -0.42 -2.15 -2.56 0.42 0.66 1.2 -1.35 -1.14 -4.14 -2.57 -3.13 0.45 0.33 -0.47 -3.74 -0.01 -0.42 - - - - 0.47 -0.33 -1.32 -0.64 -1.11 -1.65 -3.21 -0.23 -1.31 -2.12 -4.14
-0.2 -0.67 -0.16 2.18 0.11 -0.14 -0.56 0.17 0.33 -1.0 1.03 -2.64 -2.22 -0.11 -2.46 -0.27 -1.77 -0.59 -2.32 0.43 -1.48 0.1 -0.38 -2.64 -1.49 -3.69 1.22 -0.33 -1.78 -1.41 -1.3 0.93 1.41 -1.43 -1.68 -1.21 -1.18 0.74 1.01 1.45 -0.23 1.58 -1.57 -1.23 0.91 0.07 -0.03 -0.34 -3.49 -5.86 -0.33 -3.23 -1.54 -0.53 0.55 0.44 -1.47 0.36 -1.34 0.64 1.14 0.49 1.47
-6.22 -5.48 -4.91 -3.95 -4.43 -1.92 -7.15 -2.0 -2.92 -3.65 -1.54 -0.07 1.12 1.02 0.73 0.78 1.2 0.82 0.72 1.17 -2.58 -1.0 -0.09 -4.0 -3.42 -2.27 -0.81 -1.25 1.39 1.71 0.98 0.77 1.12 -3.15 1.15 0.98 -1.3 -1.05 0.48 0.68 -0.99 1.61 0.97 0.74 1.09 -0.54 -1.2 -0.63 - - - - 0.9 -1.56 0.09 -0.76 -2.1 -0.87 -2.62 0.17 0.38 0.61 1.32
-0.81 -0.24 -0.29 -2.15 -1.54 -0.66 -2.91 -1.23 -1.74 -2.2 -1.52 0.24 0.91 -0.05 0.76 -0.19 0.85 -0.11 0.67 0.73 -1.03 -0.15 0.88 -1.64 -0.52 -0.64 -1.34 -0.87 1.24 1.53 1.06 -0.33 1.26 -5.26 1.04 1.03 -0.4 -0.43 0.65 -0.08 -0.88 0.75 0.91 0.71 -0.28 -0.11 -0.06 0.24 -4.08 - -3.17 - 0.91 -0.06 0.25 -2.12 -1.52 -0.3 -1.62 0.33 -0.06 0.09 1.17
- 0.7 -1.28 1.26 -1.48 - 0.32 -0.22 -0.97 -0.43 2.55 -0.89 - - -0.53 - - 1.1 0.55 - - 0.09 2.71 1.5 0.48 -0.37 1.86 -0.13 - -1.17 - -0.11 - 0.47 - - - 0.73 -0.52 - 2.06 -0.53 - - -0.11 - - - - - - - -2.3 3.28 -0.51 - -0.48 0.34 - 0.47 0.5 -0.5 -
-4.43 -5.71 -5.12 -3.16 -1.63 -0.57 -3.12 -0.88 -0.66 -0.6 1.34 -1.5 -1.46 2.1 -1.42 2.22 -1.48 1.93 -1.26 1.6 -0.79 0.55 -1.0 -2.73 -1.55 -2.44 -0.48 -1.47 -1.99 -0.97 -0.77 2.0 1.11 -0.78 -1.13 -1.2 -1.75 -1.45 0.58 0.49 0.39 1.25 -1.0 -1.76 2.26 -1.09 -1.04 -0.95 -2.89 - -1.77 -4.5 -0.71 1.49 0.11 -1.03 -1.46 -0.33 -2.2 0.51 0.48 0.15 0.34
- - 1.71 - - - 2.33 2.62 1.04 1.09 - - - - - - 3.1 - - 2.49 - - - - - - 0.26 - - - - - - - - - 2.92 - 3.48 - - - - 1.58 - - - - - - - - 0.72 - - - - - - 2.48 - - -
2.8 1.9 1.94 3.09 1.19 0.42 0.63 0.93 1.41 0.14 -2.02 -0.45 -2.52 -2.47 -1.33 -0.74 -1.58 -1.8 -2.02 -1.16 -1.3 -0.88 -0.62 -1.46 0.23 -2.49 -0.96 -0.06 -1.01 -1.08 -0.93 -2.52 -0.78 -0.39 -1.59 -1.98 2.12 -1.07 -0.28 -0.44 0.26 -0.44 -0.93 -1.54 -2.66 -2.12 -0.74 -0.87 -2.91 -4.28 -3.42 -2.32 -1.12 -2.4 -1.08 -0.37 -1.05 -1.58 -1.83 -0.7 -0.31 0.07 -1.26
-1.28 -0.58 0.03 1.99 -0.2 0.43 0.29 0.38 -1.25 -2.37 2.21 -2.16 -0.82 -2.48 -1.78 0.04 -1.76 -0.95 -1.15 1.03 -1.83 0.28 0.81 -0.43 -0.4 -0.87 0.6 -0.41 - -1.38 -0.15 0.6 -0.81 -0.22 -1.38 -0.68 -1.34 - 0.52 - 1.0 -0.79 -0.64 0.38 -0.36 0.91 -1.37 - 0.12 -0.99 2.45 -0.03 -0.76 1.67 0.21 -1.47 0.55 -0.81 -1.85 -0.8 0.23 -0.19 -0.19
-0.17 0.72 -0.85 3.1 0.43 0.2 -0.41 0.59 -0.36 -0.35 1.26 - -1.71 -1.4 -2.69 -0.85 -0.32 - - 0.34 -0.7 - - - - - -0.64 0.28 -2.22 -0.71 -0.28 -0.7 -0.7 - -2.19 -2.11 0.08 -1.49 1.32 - -0.11 -1.68 -0.85 -2.58 0.54 -0.29 0.33 -1.29 0.49 -1.46 3.52 1.08 -1.86 -0.15 -0.67 0.23 0.35 1.05 -1.75 -1.68 -1.66 -0.66 -1.69
-0.4 0.48 0.67 2.73 0.29 0.01 0.19 0.46 0.08 -0.19 2.05 -0.14 -0.18 -2.05 -0.68 -1.48 0.11 -0.49 0.3 0.33 0.45 -1.8 -1.42 -2.81 -0.96 -2.32 0.58 -1.11 -1.32 -0.12 -0.58 -0.46 -0.37 -0.5 -0.19 0.12 -0.17 -0.52 0.27 -1.82 0.3 -1.23 -0.46 -0.87 0.03 -0.84 -0.57 -1.41 -0.9 -2.01 2.06 -0.52 -0.77 0.68 0.19 -0.49 -0.2 -0.06 -0.36 -1.23 -0.89 0.25 -1.22
-2.96 -3.55 -4.55 -0.43 -0.17 0.31 -1.36 -0.69 -0.41 0.28 0.01 -0.58 -3.81 -1.16 -3.21 -0.95 -1.95 -0.26 -1.26 -2.2 -1.82 0.91 -0.05 -1.32 -0.32 -2.21 -0.59 3.28 -3.3 -2.07 -3.75 -1.6 0.36 -1.22 -1.36 -1.47 -1.03 -1.99 -0.63 0.01 -0.34 -1.22 -2.38 -1.25 -1.79 2.66 2.85 2.13 - - - - -2.41 2.57 -1.79 0.99 -0.44 -3.81 -2.27 -0.99 -0.31 -1.19 -0.76
-1.29 -1.11 -1.17 -0.87 -2.13 -0.19 -1.28 -0.39 -0.91 -0.14 1.52 -3.02 -1.76 1.1 -1.56 1.05 -1.36 1.71 -2.0 0.17 0.18 0.8 0.64 -1.28 -0.68 -1.48 -0.02 -0.57 -2.58 -2.29 -2.02 1.47 0.92 -0.49 -1.76 -0.87 -0.93 -0.17 0.51 -0.07 2.27 0.05 -2.12 -3.63 1.23 -0.46 0.53 -0.25 -4.06 -5.43 -1.4 -3.63 -2.35 2.08 0.11 -0.62 0.51 0.09 -0.63 0.25 0.41 0.28 0.45
-1.2 -0.69 -1.21 -1.84 -1.35 0.17 -1.49 -0.29 -0.75 0.13 1.59 - -2.04 -4.31 - 0.44 -2.0 0.05 -2.95 0.92 0.35 1.2 1.16 -1.35 -0.09 -2.44 0.23 -1.24 -1.54 -3.15 -1.97 0.24 0.17 -0.04 -1.94 -0.77 -1.44 -0.07 0.54 0.55 1.8 1.08 -1.79 -2.97 1.09 -0.05 0.72 0.78 - - -0.54 -2.6 -3.08 1.4 0.71 0.29 0.58 0.39 0.02 0.77 1.61 0.72 0.79
-1.45 -1.5 -1.62 -0.65 -1.57 -0.06 -2.03 -0.25 -0.87 0.56 0.47 -1.43 -1.19 0.14 -1.52 -0.08 -1.18 0.13 -0.93 1.1 -0.06 -0.06 0.75 -1.49 -1.44 -1.89 -0.24 -0.45 -1.47 -0.91 -1.34 -0.48 1.33 -0.8 -1.37 -0.84 -0.99 0.42 1.34 0.51 1.61 0.78 -1.21 -1.31 0.15 -0.45 -0.5 -0.3 -2.81 -5.57 -0.03 -3.35 -1.23 0.32 1.44 -0.26 0.7 1.16 -0.09 1.21 1.1 1.34 1.5
-2.63 -2.88 -2.99 -1.76 -1.83 -0.53 -1.75 -0.55 -1.01 -0.55 0.38 -2.71 -2.35 0.62 -2.91 0.35 -2.02 -0.13 -2.1 1.38 -0.68 0.08 0.04 -2.04 -0.44 -2.57 -0.36 1.58 -2.5 -1.8 -1.72 0.59 1.53 -1.26 -2.27 -2.09 -1.69 0.64 0.94 -0.32 1.84 0.32 -2.31 -2.61 0.95 1.68 1.46 1.54 -3.95 - -0.28 -5.1 -2.29 1.8 0.34 1.02 -0.84 0.3 -2.07 1.13 0.06 0.81 0.51
-2.0 -3.26 -1.27 0.97 -2.74 -2.14 -1.87 -1.64 -2.14 -1.12 -0.32 - - - -4.49 - -2.89 - -1.84 1.86 -1.95 -0.18 0.47 -2.36 -1.7 -3.91 -0.19 -2.11 -3.98 -2.49 -3.46 -1.52 2.34 -3.52 -1.51 -1.97 -2.71 -0.49 -1.18 0.66 1.13 1.08 -2.67 - -3.08 -3.11 -3.08 -2.11 3.07 -3.28 3.83 -1.07 -5.32 1.18 -2.5 -0.37 -3.46 -0.55 -2.56 -0.19 1.91 -0.31 1.2
-1.77 -0.97 -1.17 1.33 0.33 -0.17 -0.97 -0.87 0.3 0.39 0.24 0.72 0.17 -1.78 0.31 -1.2 0.51 -1.89 0.07 1.08 -0.59 -0.68 0.03 -0.76 -0.47 0.83 -1.05 1.13 0.73 0.71 0.64 -1.24 0.33 -0.21 0.58 0.62 -0.82 -2.18 0.54 -1.91 -0.49 -2.11 0.83 0.41 -1.33 1.38 1.87 1.72 -2.23 -5.64 -2.98 -4.61 0.68 -1.77 -0.3 0.8 -0.77 -1.51 -1.12 -1.82 -3.25 -0.26 -2.04
-1.76 -1.04 -1.88 -0.83 -1.98 -1.71 -2.12 -2.23 -1.94 -1.9 1.78 -2.71 -3.07 1.65 -3.19 0.28 -2.15 -0.21 -0.64 0.15 -0.18 -0.38 -0.02 -1.66 -1.01 -1.43 0.49 -0.18 -2.43 -2.29 -2.45 1.56 -0.28 -0.35 -2.56 -1.68 -1.0 0.03 -0.23 -0.09 -0.77 0.26 -2.22 -2.07 1.12 -0.43 -0.91 -0.59 2.9 -4.71 0.69 -1.99 -2.39 3.43 -0.46 -0.6 -0.84 -1.14 -1.49 -0.93 0.6 -0.21 0.52
-1.12 -0.72 0.19 -0.59 0.42 0.71 -0.16 0.75 0.97 -0.13 0.7 1.0 0.12 2.1 -0.25 0.84 1.13 1.74 0.87 0.53 -0.65 -2.74 -0.93 -1.57 -1.48 -1.36 -1.53 -0.98 -0.66 -1.0 -0.09 0.53 - 0.04 -1.27 -0.7 0.51 -1.7 0.05 - -1.97 -0.95 -0.21 -1.57 0.86 0.44 1.49 -0.23 - -2.73 0.93 -0.93 -0.65 -1.11 -0.13 -0.63 -0.92 -0.47 0.31 -1.96 -0.12 -0.61 0.39
-0.71 -1.48 -1.13 0.14 1.09 1.07 0.5 0.99 1.11 0.56 -1.83 1.01 -0.54 -0.02 -0.15 0.22 -0.07 0.02 -0.11 0.03 -0.68 -2.14 -2.11 -2.34 -1.5 -2.28 0.25 1.07 0.03 -0.03 0.06 -0.26 -0.25 0.32 -0.1 -0.03 0.19 0.41 -0.01 -0.03 -0.35 0.2 -0.15 -0.28 -0.08 0.82 1.17 0.91 -2.03 -5.57 -1.87 0.04 -0.01 0.08 -0.23 0.63 -0.61 -0.49 -0.79 -0.91 0.19 -0.54 0.01
0.76 0.43 0.51 -0.19 0.06 -0.24 -0.77 -0.1 0.33 -0.34 -0.56 0.18 -0.15 0.39 -0.4 0.3 -0.04 0.37 -0.19 0.2 0.02 0.58 0.67 0.65 -0.51 0.12 0.06 -0.4 0.57 0.69 0.15 0.34 -0.29 -0.06 0.46 0.45 0.38 -0.29 0.12 -0.53 -0.29 0.07 0.3 -0.22 0.49 -0.36 -0.15 -0.15 -3.8 -4.2 -1.76 -2.64 0.37 0.2 0.02 -0.48 -0.17 -0.23 -0.31 0.03 -0.31 -0.2 -0.33
0.98 1.11 0.53 -2.24 -0.26 -1.14 -0.06 -0.12 0.64 -0.77 0.27 -1.39 -2.04 -0.91 -0.57 1.27 -0.81 -0.58 -0.64 -0.2 -0.73 - - - - - 0.86 -1.05 0.37 0.36 -0.65 1.86 - 0.29 0.49 0.38 0.4 -0.8 -1.44 -1.44 0.42 -3.02 -2.2 -0.29 2.61 -1.63 -2.6 -1.63 - -2.22 -1.95 -1.26 -1.64 3.58 0.15 0.11 -0.41 - -2.09 -1.44 -0.68 -1.42 -2.03
-1.76 -2.53 -1.17 -3.44 -2.48 -2.12 -3.36 -2.11 -2.78 -3.06 1.11 0.47 0.77 -0.05 0.72 0.03 0.93 -0.31 0.88 -0.43 -2.77 0.29 1.23 -3.33 0.0 -2.27 -0.52 -0.86 0.92 1.26 0.84 0.25 -1.44 -2.75 0.94 1.03 0.37 -2.7 1.08 0.57 -2.52 0.68 1.18 0.8 0.37 -0.02 -0.28 0.22 - - - - 1.23 -0.08 0.14 -1.73 -0.25 -1.22 -1.36 0.44 0.23 1.0 1.49
-5.14 -6.4 -7.4 - -4.82 -4.8 -5.73 -4.52 -4.4 -5.08 -6.16 -4.31 -5.33 -2.06 -4.32 -8.39 -4.9 -4.92 -4.66 -3.16 -4.86 -5.01 -3.54 -6.27 -4.79 -5.47 -4.22 -5.67 -4.26 -4.93 -4.77 -1.59 -3.33 -7.65 -4.63 -3.99 -4.97 -6.42 -3.32 -4.47 -4.49 -4.18 -4.17 -4.14 -1.51 -5.67 -4.21 -6.24 5.65 - 2.51 -6.2 -4.07 1.95 -4.05 -4.31 -5.63 -3.49 -4.7 -3.48 -4.03 -3.53 -4.3
-0.93 -2.24 -4.7 0.9 1.56 1.16 0.56 0.62 1.93 0.52 -0.8 1.1 1.26 -2.81 1.24 -4.08 1.23 - 1.3 -0.6 -1.63 -0.04 0.89 -2.54 -0.52 -0.95 -1.84 -2.95 1.28 1.31 0.95 -4.52 -0.04 -3.94 1.49 1.44 -0.18 -2.13 -1.12 -3.34 -0.7 -1.93 1.55 1.11 -2.51 -3.55 -2.17 -2.2 - - - - 1.75 -1.58 -1.33 -1.43 -0.99 -1.21 -1.67 -0.41 -4.91 -0.91 -
-0.76 0.54 1.77 2.09 -1.24 -0.22 -0.55 -0.61 -0.71 - -0.79 - -1.27 - - - - - - 1.75 - - - - - - 0.89 - - 0.2 - -0.86 - 1.31 - -0.85 -1.49 - 2.31 1.31 - -0.27 - - -0.86 - 0.17 - 1.32 - -0.19 - - 2.65 -0.26 - -0.23 0.71 0.67 - 2.34 -0.25 3.06
-1.51 -2.37 -1.37 0.75 -0.26 -1.65 -1.26 - 0.95 -1.61 1.87 0.83 -1.61 - -1.61 0.64 0.89 0.24 0.03 -0.01 -1.63 - - - - - -0.29 -0.23 -1.15 0.16 -0.23 -0.21 1.38 -0.62 -2.28 -0.11 -1.22 -1.41 -0.03 -1.61 3.03 -1.61 1.13 1.14 -1.19 1.1 0.82 1.38 -2.02 - 0.05 0.15 0.42 - 1.57 -1.29 -0.01 0.6 - -0.03 - 0.73 -
1.25 - 1.41 4.26 - - - - -0.34 1.36 - 0.8 1.75 - - - 1.2 - 0.25 - - - - - - -0.27 0.03 - - - 0.21 - - - - - 2.27 - - - - 1.15 - 2.75 - - - - 0.75 - 2.83 - - 0.35 - - - - - - - - -
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- - - - - - - - - - - - - - - - - - - - - - - - - - 5.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.