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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.31 | - | - | -0.37 | 1.59 | -0.48 | 3.02 | 0.47 | 0.84 | 2.16 | 1.14 | - | -0.57 | -0.28 | -0.55 | -0.32 | -0.11 | - | -2.07 | -1.15 | - | 2.96 | 0.62 | -2.62 | 1.38 | -0.96 | - | - | -1.62 | -0.74 | -0.51 | - | 0.83 | -1.16 | -0.18 | -0.09 | -0.95 | - | -1.15 | - | 0.84 | -1.15 | -1.32 | -1.1 | - | -0.78 | - | -0.74 | - | - | - | - | -0.93 | 2.15 | - | - | 0.46 | -0.29 | -0.21 | 1.17 | -1.13 | -1.13 | -1.12 | |
| -1.59 | - | -1.85 | 0.69 | 0.52 | -1.04 | 1.72 | -0.99 | -0.99 | 1.29 | 2.09 | - | - | - | -2.08 | -1.84 | -1.06 | 0.17 | - | 0.92 | 0.47 | 1.12 | -0.94 | -0.93 | 0.12 | -0.9 | 1.02 | 1.29 | -1.63 | -1.74 | -0.43 | 1.1 | 0.89 | - | - | 0.37 | -1.7 | -0.84 | -0.09 | -1.09 | -0.11 | 0.91 | -2.26 | -1.09 | -0.09 | 2.3 | 0.34 | -0.68 | -1.5 | - | - | - | -1.86 | 1.16 | 0.92 | 0.24 | -1.08 | -0.11 | -1.16 | -1.1 | - | 1.25 | 1.23 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.