Heatmap: Cluster_174 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene	-O2 early	-O2 late	-O2 middle	24h,Alfalfa	24h,Fructose	24h,Maltose	24h,Sorbitol	24h,Xylan	24h,Xylan+Xylose	24h,Xylose	Fructose,microbial culture	Laboratory transformant,Pure culture	MjkA KO,expo	MjkA KO,post expo	MjkA/mjkB KO,expo	MjkA/mjkB KO,post expo	MjkB KO,expo	MjkB KO,post expo	MjkB OE,expo	N593 kusA KO,2h	N593 kusA KO,8h	NW186,+1.1mM arg	NW186,+5mM citr	NW186,-Fe	NW305,+10gl Fe	NW305,-Fe	SEB,microbial culture	WT,2h,MM + L-rhamnose	WT,70% max biomass	WT,90% max biomass	WT,expo	WT,post expo	araR KO,2h	araR KO,8h	crhA-G KO,70% max biomass	crhA-G KO,90% max biomass	expo	gaaC KO,2h	gaaR KO,2h	gaaR KO,8h	gaaR/araR KO,2h	gaaR/araR KO,8h	gaaX KO,pure culture	histone deacetylase KO,expo	histone deacetylase KO,post expo	lraA KO,2h,MM + L-rhamnose	lraB KO,2h,MM + L-rhamnose	lraC KO,2h,MM + L-rhamnose	multiploid,asex,free 12h	multiploid,asex,free 6h	multiploid,asex,immob 12h	multiploid,asex,immob 6h	parent,pure culture	post expo	rhaR KO,2h	rhaR KO,2h,MM + L-rhamnose	rhaR KO,8h	rhaR/araR KO,2h	rhaR/araR KO,8h	rhaR/araR/gaaR KO,2h	rhaR/araR/gaaR KO,8h	rhaR/gaaR KO,2h	rhaR/gaaR KO,8h
CAK44911	5.45	9.5	10.08	1.27	1.85	2.57	2.55	1.86	2.72	5.66	2.75	0.31	1.05	14.85	1.14	16.04	0.68	16.53	1.36	6.47	7.3	3.44	2.05	0.97	1.32	1.86	7.64	2.82	1.0	1.46	1.29	14.78	9.06	8.95	1.25	0.76	2.68	5.68	5.94	19.01	3.85	15.5	0.53	1.21	14.78	4.05	1.86	2.79	0.15	0.06	0.42	0.0	0.97	2.62	3.91	5.12	8.02	4.83	5.74	7.95	17.34	4.39	11.78
CAK44912	0.84	1.54	1.31	0.74	1.83	2.59	1.5	2.18	2.52	3.33	0.44	0.36	0.74	13.69	0.78	13.19	0.76	8.26	0.96	2.26	3.04	1.56	0.86	0.47	0.75	0.72	4.2	1.33	0.52	0.58	0.7	14.76	2.56	3.38	0.52	0.79	0.85	1.23	3.04	7.52	1.63	7.57	0.7	0.63	14.48	0.92	0.85	0.41	0.12	0.0	0.12	0.08	0.77	8.49	2.68	1.62	2.72	2.28	3.07	2.54	5.96	2.58	6.25

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)