Heatmap: Cluster_123 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-0.68 -0.33 -0.04 -1.65 -1.36 -0.67 -1.02 -0.55 -1.38 -1.3 1.97 -2.46 -2.39 -0.05 -2.22 -0.06 -2.38 -0.08 -2.15 0.13 -0.01 -3.81 -1.39 -2.7 -2.43 -3.29 1.29 1.4 -2.26 -2.06 -2.14 -0.43 -0.08 -0.34 -2.02 -1.83 -1.04 0.33 0.79 0.0 0.27 0.42 -2.1 -2.22 -0.32 1.56 1.61 1.84 -2.45 -3.27 0.18 -2.64 -2.09 1.18 0.71 1.18 0.83 0.65 0.55 1.16 0.6 0.98 0.45
1.08 1.84 1.71 2.01 -1.06 -1.5 -0.65 -1.13 -1.54 -1.83 1.16 -0.15 -3.5 -0.66 -3.28 -0.73 -2.89 -0.47 -3.3 -2.1 -1.81 -1.22 -0.58 -0.84 -0.81 -2.09 0.55 -1.68 -3.17 -2.66 -3.07 -1.1 -1.56 -1.68 -2.54 -2.4 0.07 -3.1 -1.44 -3.32 -1.57 -3.38 -2.47 -3.44 -0.66 -2.14 -1.28 -1.56 -2.9 2.04 4.11 2.81 -1.79 -3.14 -2.09 -1.47 -2.12 -2.07 -1.35 -1.97 -2.86 -2.06 -1.76
-3.04 -3.25 -3.19 -1.34 0.11 0.58 0.22 0.61 -0.28 0.17 1.37 -0.14 -0.96 0.77 -0.94 0.51 -0.97 0.67 -0.37 1.1 0.84 -2.12 -1.19 -1.36 -0.27 -1.16 0.2 0.65 -0.92 -0.75 -0.65 0.06 1.13 -0.11 -13.26 - -1.39 -0.58 1.37 -0.25 0.37 -0.84 -0.49 -0.79 0.45 1.15 1.56 0.69 -0.82 -5.6 -0.68 -4.77 -0.92 -3.12 0.63 0.3 1.19 0.03 0.84 0.55 -1.48 0.49 -0.23
-2.57 -2.95 -2.45 -3.24 0.6 -0.14 -0.46 1.95 0.61 1.5 2.67 -2.43 -1.85 -1.23 -1.24 -0.26 -0.88 -1.28 -0.24 -2.0 -0.62 0.2 0.82 -1.97 -3.36 -2.05 2.05 1.09 -2.16 -1.3 -1.46 -1.09 -1.82 -2.51 -1.66 -1.07 0.37 0.57 -0.29 0.87 -1.79 0.48 -0.7 -2.12 -1.2 1.29 0.11 0.94 -6.67 -11.47 -7.62 -9.82 -1.78 -0.23 0.76 1.14 0.12 0.06 -0.12 -0.06 -0.28 0.67 1.0
-0.18 -0.62 -0.69 0.93 0.71 1.04 0.76 0.67 0.38 0.6 -0.28 0.05 -0.34 -0.45 -0.21 -0.39 -0.21 -0.2 -0.31 -1.14 0.49 0.91 0.76 -0.81 0.49 -0.09 0.75 -0.77 0.04 0.09 -0.29 -0.16 -1.17 0.49 0.04 -0.01 -0.55 -0.61 -0.28 0.26 0.78 0.48 0.22 -0.27 -0.01 -0.88 -0.42 -0.7 0.35 -1.61 -0.99 -0.4 0.1 -0.42 -0.9 -0.7 0.49 -1.18 0.19 -0.92 0.48 -1.11 -0.41
-0.45 0.86 0.98 3.02 -0.71 0.25 -0.17 -0.33 -0.93 -0.74 1.43 -1.61 -1.42 0.71 -1.28 0.14 -0.95 0.7 -1.22 -0.84 -0.34 - - - - - 1.29 -0.14 -1.03 -0.5 -1.46 0.68 -0.54 -1.08 -0.58 -0.67 -1.01 -1.09 -0.57 0.18 0.89 1.2 -1.55 -1.3 0.65 -0.3 0.98 0.41 -2.48 -2.38 1.2 -0.18 -1.51 -0.53 -1.12 1.05 -0.32 -0.34 -0.71 -0.78 0.21 0.16 -0.39
-0.9 0.01 0.02 1.79 0.65 1.27 1.45 0.82 0.42 0.26 0.5 -1.38 -0.94 0.24 -0.82 0.19 -0.69 -0.08 -1.2 -2.37 -1.41 0.99 0.3 0.49 1.75 1.37 0.93 -0.5 -0.83 -0.79 -1.04 -0.34 -1.95 -1.94 -0.83 -1.0 -1.32 -2.41 -2.08 -1.34 -0.61 -0.66 -1.07 -0.61 0.13 -0.9 1.45 0.82 -1.43 -1.15 1.16 0.46 -1.09 -1.37 -2.29 1.81 -0.79 -2.44 -2.0 -1.84 -0.98 -2.54 -2.08
-0.73 -0.6 -0.91 0.69 -0.15 0.15 0.29 0.39 -0.41 -0.1 -0.02 0.54 -0.42 0.4 -0.07 0.55 -0.13 0.51 0.41 -0.02 0.78 0.37 0.58 -0.61 -0.98 -0.14 0.38 -2.07 0.04 -0.15 -0.6 0.54 0.33 0.28 0.21 -0.09 0.15 -0.97 0.09 0.29 1.0 0.44 0.56 0.09 0.66 -1.01 -0.55 -1.11 -3.56 -5.93 -4.49 -4.71 0.43 0.57 -0.47 -0.43 0.6 0.08 0.24 0.02 0.1 -0.13 -0.33
-0.11 -0.35 -0.68 -0.03 1.0 1.8 1.37 1.74 0.34 1.11 0.24 -1.04 -0.98 -1.26 -0.79 -1.08 -1.1 -1.11 -0.95 -1.83 0.65 0.73 -0.52 -0.42 -0.23 -0.37 0.48 -1.15 -0.49 -0.86 -0.8 -1.03 -0.67 -0.58 -0.67 -0.87 -0.41 -1.69 -1.55 -0.86 2.14 0.06 -0.78 -0.86 -1.15 -0.52 0.4 -0.03 1.83 -1.02 0.39 1.38 -0.64 -1.52 -2.63 -0.1 0.35 -1.77 -0.49 -0.66 0.16 -2.61 -1.88
0.03 1.87 1.04 -1.8 -0.37 -0.45 -1.43 0.17 0.71 -0.24 1.98 -0.6 -1.22 0.29 -1.17 0.18 -1.17 -0.15 -0.75 0.23 0.71 0.37 2.19 0.09 -0.77 -0.79 -0.19 -1.45 -1.12 -0.87 -1.1 0.19 0.51 0.11 -0.61 -0.45 -0.48 1.32 0.19 -0.68 1.56 -0.26 -0.76 -1.27 0.24 -1.59 -0.72 -0.62 -2.51 -4.7 -0.43 -2.19 -0.7 -1.94 -0.35 -0.45 0.19 0.15 -0.69 0.34 -1.13 -0.02 -1.28
0.47 -0.16 -0.59 -0.39 0.23 1.3 -0.43 -0.16 -0.52 0.52 -0.17 0.35 0.7 -0.37 0.75 -0.48 0.69 -0.41 0.87 -1.36 0.12 0.3 -0.82 -1.06 -0.76 -0.77 0.09 -3.81 0.66 0.38 0.86 -0.43 -0.23 -0.83 0.62 0.39 0.52 -4.74 -1.12 -1.19 1.65 0.06 0.2 0.75 -0.59 -2.44 -2.06 -2.3 2.0 -0.15 -0.16 1.62 0.34 -1.53 -2.4 -1.54 -0.32 -1.42 -1.62 -0.68 -0.3 -1.98 -3.18
-1.07 0.41 0.72 0.93 1.28 0.57 0.59 -0.17 0.95 0.1 2.34 -0.31 -1.16 1.34 -1.18 1.1 -0.97 1.08 -1.09 -0.47 -0.41 -1.4 -0.02 0.14 0.08 -0.24 1.48 -1.61 -0.53 -0.52 -1.03 0.93 0.33 -0.6 -0.45 -0.44 -1.54 -1.11 -1.28 -0.26 -0.71 -0.27 -0.33 -0.96 1.38 -1.75 -0.33 -1.16 -0.01 -4.3 -1.23 -2.93 -0.34 0.55 -1.62 0.14 -0.44 -1.57 -1.02 -1.07 -0.3 -1.78 -1.6
-3.33 -3.39 -3.61 -1.19 -0.43 -0.6 -0.55 0.04 0.37 -0.89 3.27 -1.47 -0.94 0.02 -1.84 -0.44 -1.43 0.15 -1.9 -1.01 -1.99 2.26 2.63 1.69 2.25 1.49 -0.08 -0.18 -0.97 -0.75 -1.51 -0.35 -1.63 -1.53 -0.76 -0.51 -1.67 -1.28 -0.79 -2.62 0.12 -1.1 -0.84 -1.79 -0.05 -0.64 0.05 -0.32 -0.62 - -3.35 -5.99 -0.64 0.18 -1.61 -0.24 0.16 -1.6 -0.97 -0.97 -2.6 -0.94 -1.71
-2.03 -1.77 -1.75 -0.86 -0.18 -0.06 -0.19 -0.45 -0.48 -0.57 1.12 0.3 -1.3 0.66 -1.3 0.72 -1.26 0.81 -1.37 0.33 0.17 -0.64 0.53 -1.32 -0.64 -0.75 0.98 -1.01 -0.88 -0.82 -1.26 0.64 0.37 -0.03 -0.89 -1.01 -1.89 0.07 0.46 1.14 0.76 1.28 -0.33 -1.19 0.69 0.2 -0.13 -0.24 0.77 -3.94 0.54 -4.12 -0.52 -0.06 0.1 -0.09 0.09 0.3 -0.29 0.56 1.15 0.6 0.81
-2.5 -2.26 -2.58 0.87 -1.48 -1.37 -2.94 -2.48 -1.37 -0.97 -1.75 -0.1 0.79 -2.21 0.4 -0.56 0.65 -0.15 0.12 0.53 0.24 0.88 -0.74 -0.93 -0.19 -1.53 -0.75 -0.85 0.01 -0.62 0.84 -0.17 1.42 0.08 -1.24 -0.77 -0.83 2.65 0.82 0.27 1.03 0.35 -0.53 0.03 -0.23 -1.84 1.2 0.83 - - -3.74 - -0.17 0.8 0.44 0.32 -0.79 1.14 -0.56 -0.12 -1.21 0.45 0.45
-1.6 -1.56 -1.87 -2.33 -4.08 -3.12 - -2.97 -4.54 -4.44 -3.62 -1.47 -2.11 -0.99 -2.1 -0.85 -3.07 - -1.73 1.56 -0.13 1.6 -1.74 -3.51 -4.39 -3.54 -1.9 0.86 -0.63 -1.67 -0.87 -2.11 0.88 -0.11 -1.69 -1.27 -2.13 3.9 1.21 0.7 0.2 0.69 -1.95 -3.11 -2.68 0.99 0.92 1.1 - - - - -1.3 -0.04 0.9 0.81 -1.08 1.22 0.29 -0.3 0.5 0.72 1.61
0.63 -0.38 0.51 -1.53 -3.29 -3.34 - -3.28 -1.8 -2.19 -0.83 -1.09 -1.15 -1.19 -1.3 -1.48 -1.1 -0.88 -2.25 1.66 -0.33 -0.78 -2.66 -3.17 -3.68 -4.74 -0.48 -2.93 -2.78 -0.76 -0.66 -1.6 1.76 -2.32 -3.82 -1.41 -1.23 1.68 1.5 2.6 0.93 2.04 -2.48 -1.26 -1.08 -0.92 -0.3 -0.1 - - - - -3.08 -0.24 -0.98 -0.4 0.72 0.51 0.8 0.39 2.3 1.03 2.46
-2.35 0.78 -0.72 -2.88 0.08 1.54 0.57 2.3 1.77 0.49 -0.79 -0.92 -3.08 -1.09 -3.03 -0.9 -2.8 -0.91 -2.8 -0.66 0.36 -2.1 1.79 -2.25 -1.63 -2.6 -0.67 0.92 -2.88 -2.3 -2.75 -0.99 -0.22 -1.67 -2.56 -2.39 -3.28 -0.87 0.56 -1.62 3.03 -1.1 -2.24 -2.92 -0.94 1.02 1.23 2.09 -3.91 -1.33 -1.26 1.46 -2.55 -2.36 -0.48 0.63 -0.6 -0.73 -2.0 0.07 -1.93 -0.49 -1.88
-2.13 -1.7 -1.73 -1.88 -1.11 0.88 -1.35 2.23 -0.37 0.6 1.54 -0.56 -1.99 -0.46 -1.94 -0.72 -1.48 -0.59 -1.83 0.62 0.53 -0.03 2.31 -0.75 -2.21 -1.66 -0.18 1.34 -1.56 -0.89 -1.72 -1.54 0.93 -1.85 -1.4 -1.12 -2.34 1.16 1.23 -0.19 0.48 0.52 -1.7 -1.75 -0.69 1.45 1.16 0.95 -3.65 -6.34 -0.87 -3.71 -1.82 -2.42 0.07 1.06 0.25 -0.37 -1.19 0.31 -0.32 -0.04 0.22
-1.21 -1.17 -1.15 -1.2 0.5 0.55 0.66 0.72 0.0 0.22 2.34 -0.37 -0.8 0.6 -0.77 0.6 -0.75 0.41 -0.46 0.03 0.54 0.18 0.64 -0.57 0.44 0.64 0.93 -0.78 -0.52 -0.3 -0.59 0.64 -0.07 1.04 -0.49 -0.35 -1.06 -0.2 -0.51 1.3 -0.74 0.31 -0.35 -0.63 0.62 -0.71 -0.28 -1.05 -2.65 -4.17 -1.5 -2.8 -0.38 -0.62 -1.08 -1.1 0.56 -1.29 0.08 -1.25 0.12 -1.07 0.64
-0.76 -0.42 -0.35 0.67 -0.22 -0.31 -0.02 0.02 -0.86 -0.26 -0.08 -0.04 -0.17 0.31 -0.35 0.15 -0.15 0.1 -0.24 0.42 0.31 -0.61 -0.3 -1.08 -0.09 -0.14 -0.2 0.35 0.29 0.43 -0.15 0.13 0.24 -0.16 0.26 0.28 -0.73 0.98 0.33 -0.0 0.38 0.0 0.07 -0.18 0.18 0.59 0.58 0.61 -0.82 -6.16 -1.66 -3.45 0.06 0.16 -0.08 0.75 0.28 0.22 -0.06 0.24 -0.34 0.32 -0.22
-3.2 -3.03 -2.99 -1.67 0.99 -1.15 0.29 3.8 1.78 3.4 -4.45 -3.21 -4.0 0.43 -3.93 0.29 -3.72 0.37 -3.49 -0.45 -2.22 - - - - - -1.36 2.07 -3.44 -3.45 -3.74 0.37 -0.88 -1.97 -3.67 -3.17 -2.76 -0.8 -1.25 -0.89 -3.05 -1.7 -4.21 -3.95 0.58 2.49 1.45 1.48 -6.25 -5.04 -3.24 -5.08 -3.7 -0.41 -1.98 0.08 -2.42 -2.85 -3.0 -2.99 -1.8 -2.87 -1.9
-1.76 -0.43 -0.54 -2.96 1.09 -2.07 0.89 4.67 2.17 4.13 -2.59 -3.57 -3.78 -1.79 -4.02 -1.99 -3.61 -1.95 -4.21 -2.43 -2.46 -1.51 -2.39 -3.98 -4.24 -4.02 -3.48 -1.78 -4.16 -3.86 -3.75 -2.0 -1.78 -2.4 -4.14 -3.56 -2.48 -0.39 -2.1 -2.57 -1.68 -2.57 -3.48 -4.46 -1.81 -1.92 -2.48 -2.3 -5.94 -7.89 -3.49 -4.94 -3.69 -1.03 -1.62 -1.8 -2.72 -1.54 -2.88 -1.52 -3.55 -1.71 -2.85
-1.09 -0.42 -0.58 -0.09 -0.98 -0.58 -0.61 -0.76 -1.79 -1.19 1.96 -1.53 -0.61 1.28 -0.42 1.27 -0.52 1.01 -0.44 0.45 0.88 -1.25 0.02 -1.11 -0.36 -1.47 0.84 -1.1 -0.34 -0.27 -0.78 1.09 0.38 0.57 -0.4 -0.25 -0.89 -0.64 0.21 0.97 -0.12 0.7 -1.04 -0.49 1.3 -0.56 0.2 -0.56 -2.54 -4.99 -1.76 -3.32 -0.86 0.17 -0.94 -0.57 1.05 -0.36 0.95 0.09 0.42 -0.15 0.39
1.93 1.57 1.56 -4.34 -0.97 1.16 -0.38 1.75 -0.38 1.63 -2.58 -3.69 -1.79 1.12 -1.67 1.44 -2.0 0.75 -1.64 0.03 -0.29 -2.12 -2.77 -4.46 -2.84 -4.63 0.04 -0.32 -0.91 -0.23 -1.28 1.3 -0.3 -0.79 -0.87 -0.35 1.11 -1.15 -0.74 0.37 -1.49 1.25 -2.54 -1.61 0.86 0.19 0.44 0.46 -4.74 - -5.49 -9.93 -2.0 -0.09 -1.3 0.19 -1.43 -0.98 -0.44 -0.86 0.92 -0.36 1.13
2.94 2.61 2.29 -5.09 -1.25 -0.45 -1.42 2.29 0.57 3.55 -3.78 -5.2 -2.6 -0.72 -2.3 -0.37 -2.59 -1.38 -2.23 -1.68 0.74 -5.21 -4.4 -5.89 -5.59 -6.28 -0.48 -1.93 -1.08 -0.26 -1.73 -0.37 -2.57 0.32 -1.07 -0.4 2.12 -3.05 -2.33 -0.85 -4.28 -1.02 -3.73 -2.34 -0.85 -1.3 -1.45 -0.86 -8.13 - - -9.6 -3.03 -2.29 -2.5 0.07 -1.28 -3.48 0.63 -3.64 -0.84 -2.37 0.71
-0.56 0.05 -0.14 -1.57 -1.38 -0.41 -1.25 -0.68 -0.98 -1.26 2.46 -1.84 -1.94 0.52 -1.81 0.63 -1.9 0.49 -1.85 -0.33 0.12 1.54 1.91 -2.04 0.8 -2.39 0.85 -2.15 -1.84 -1.88 -2.06 0.25 -0.11 -0.09 -1.75 -1.68 -0.68 -3.13 -0.29 0.87 0.9 1.59 -1.55 -1.8 0.69 -2.62 -1.49 -1.79 0.94 -2.94 1.53 -2.14 -1.65 1.24 -0.96 -1.19 0.6 -0.85 0.36 -0.71 1.33 -1.14 0.53
0.21 -0.84 -0.81 -1.01 0.03 0.18 0.41 1.57 0.26 1.36 -0.02 -1.5 -1.89 -2.08 -1.38 -1.27 -1.46 -2.25 -1.9 0.03 0.57 -0.18 -0.08 -2.58 -1.46 -2.63 0.59 1.68 -1.01 -1.01 -1.64 -1.66 0.37 0.6 -1.02 -0.97 0.1 2.15 -0.59 -0.02 0.02 -0.06 -1.06 -1.85 -2.15 1.15 0.81 1.06 -3.74 -5.76 -0.98 -6.54 -1.39 -2.64 -0.05 1.72 0.73 0.18 1.02 0.01 0.53 -0.04 0.56
-0.23 0.46 0.35 -0.2 0.21 0.28 -0.29 -0.53 -0.05 -0.14 1.63 -0.93 -1.63 -0.17 -1.7 -0.03 -1.68 -0.09 -1.5 -0.04 0.8 -1.31 -0.73 -0.24 -1.0 -0.35 1.1 0.21 -1.05 -0.98 -1.43 0.25 -0.56 1.0 -1.15 -1.04 -0.35 -0.92 -0.13 0.66 -0.01 0.73 -1.21 -1.7 0.17 0.63 0.95 0.72 -1.61 -2.39 0.61 -1.5 -1.24 0.82 -0.39 0.56 0.63 -0.19 0.62 -0.28 0.76 0.25 0.9
-2.1 -2.37 -2.89 2.04 0.88 -0.02 -0.43 0.94 0.81 0.23 -0.07 0.66 0.54 -1.24 0.97 -1.35 1.15 -2.4 0.7 -0.92 -1.0 -2.35 -0.79 -2.84 -3.22 -5.02 -0.47 -1.46 1.29 1.28 1.17 -1.49 -2.36 -3.13 1.69 1.58 0.52 -0.42 -0.77 -0.23 -1.3 -2.03 1.38 1.06 -1.7 -1.85 -0.91 -1.36 0.21 -6.71 -1.39 -3.68 1.45 -2.33 0.1 -0.02 -0.9 -0.77 -1.47 -1.18 -1.15 0.2 0.44
-0.4 -1.43 -1.37 0.51 1.62 1.13 0.47 1.23 1.4 0.74 -0.16 -0.08 -0.79 0.47 -0.76 0.35 -0.69 0.01 -0.67 -0.12 0.06 -2.7 -1.16 -2.31 -1.24 -1.8 0.1 1.18 -0.37 -0.11 -0.33 -0.2 0.53 -0.04 -0.34 -0.11 -0.75 -0.15 -0.21 -0.5 1.24 -0.85 -0.16 -0.48 0.17 0.76 0.98 0.51 -4.43 -2.94 -0.87 -1.36 0.05 -0.3 -0.61 0.54 0.32 -0.05 -0.79 0.48 -1.13 -0.76 -1.2
-1.58 -4.49 -3.7 -4.93 -0.23 -0.75 -0.74 2.13 0.07 1.32 -1.24 -3.65 -4.28 -0.38 -4.09 -0.65 -3.71 -0.26 -3.53 1.37 0.56 -4.52 -1.56 -4.96 -4.55 -4.81 0.44 0.86 -4.07 -2.95 -3.77 -0.62 2.19 0.07 -3.51 -3.09 -0.65 0.69 0.61 0.67 1.25 0.86 -2.62 -4.16 -0.49 1.5 1.55 1.08 -4.0 - -6.21 -9.85 -3.83 0.61 0.48 1.8 -0.58 1.34 -0.65 1.85 -0.14 0.45 -1.23
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.