Heatmap: Cluster_193 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	-O2 early	-O2 late	-O2 middle	24h,Alfalfa	24h,Fructose	24h,Maltose	24h,Sorbitol	24h,Xylan	24h,Xylan+Xylose	24h,Xylose	Fructose,microbial culture	Laboratory transformant,Pure culture	MjkA KO,expo	MjkA KO,post expo	MjkA/mjkB KO,expo	MjkA/mjkB KO,post expo	MjkB KO,expo	MjkB KO,post expo	MjkB OE,expo	N593 kusA KO,2h	N593 kusA KO,8h	NW186,+1.1mM arg	NW186,+5mM citr	NW186,-Fe	NW305,+10gl Fe	NW305,-Fe	SEB,microbial culture	WT,2h,MM + L-rhamnose	WT,70% max biomass	WT,90% max biomass	WT,expo	WT,post expo	araR KO,2h	araR KO,8h	crhA-G KO,70% max biomass	crhA-G KO,90% max biomass	expo	gaaC KO,2h	gaaR KO,2h	gaaR KO,8h	gaaR/araR KO,2h	gaaR/araR KO,8h	gaaX KO,pure culture	histone deacetylase KO,expo	histone deacetylase KO,post expo	lraA KO,2h,MM + L-rhamnose	lraB KO,2h,MM + L-rhamnose	lraC KO,2h,MM + L-rhamnose	multiploid,asex,free 12h	multiploid,asex,free 6h	multiploid,asex,immob 12h	multiploid,asex,immob 6h	parent,pure culture	post expo	rhaR KO,2h	rhaR KO,2h,MM + L-rhamnose	rhaR KO,8h	rhaR/araR KO,2h	rhaR/araR KO,8h	rhaR/araR/gaaR KO,2h	rhaR/araR/gaaR KO,8h	rhaR/gaaR KO,2h	rhaR/gaaR KO,8h
CAK41740	-	-	-	-	-	-	-	1.55	-	-	3.24	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.53	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.58	-	-	-	-	-	-	-	-	-
CAK97285	-	-	-	-	-	4.45	-	-	1.92	-	2.91	-	-	-	-	-	-	-	-	-	-	2.02	-	-	-	-	2.31	3.8	-	2.77	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.