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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -2.53 | -2.23 | -3.82 | 1.32 | 0.7 | -0.0 | -0.11 | 0.11 | 0.96 | -0.18 | -1.56 | 0.49 | -0.06 | -0.29 | 0.54 | 0.46 | 0.09 | -3.78 | 0.42 | 0.3 | -1.06 | -1.26 | -0.9 | 0.38 | -0.97 | -0.85 | 0.94 | -0.34 | -0.11 | 0.45 | -1.18 | 0.74 | 0.75 | -1.47 | 0.27 | 0.0 | 0.81 | -1.23 | 0.53 | 0.66 | -0.25 | 1.59 | -0.13 | -1.21 | -1.04 | 0.15 | -1.02 | 0.35 | -2.45 | - | -2.97 | -3.61 | -0.02 | 1.61 | -1.45 | 0.74 | -0.03 | -0.54 | -0.53 | -0.47 | 0.98 | -0.02 | 0.15 | |
| -1.07 | 1.67 | 0.24 | 1.9 | -3.0 | -2.97 | -1.91 | -3.68 | -2.48 | -1.77 | -1.51 | -2.95 | -4.61 | 0.3 | -2.57 | -2.0 | -4.55 | -0.21 | - | -1.26 | -2.6 | -3.96 | -3.32 | -4.99 | -5.05 | -3.39 | -0.71 | 0.26 | -2.05 | -2.61 | - | -0.1 | 0.4 | -1.27 | -2.17 | -4.0 | -1.02 | -0.02 | -2.59 | 1.28 | -0.14 | 1.0 | -3.75 | -2.96 | 1.04 | -0.02 | -0.34 | 0.28 | - | -1.19 | 0.82 | -0.23 | -3.36 | 3.99 | -2.57 | 1.92 | -3.57 | 0.35 | -2.06 | -1.26 | 1.65 | -0.39 | 1.6 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.