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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.12 | -1.42 | -1.24 | 0.54 | 0.61 | 0.82 | -0.25 | 0.02 | 0.62 | 0.68 | -1.58 | 0.25 | -0.21 | 0.21 | 0.02 | 0.41 | 0.16 | 0.03 | 0.05 | 0.79 | 0.36 | 1.07 | 1.04 | -0.29 | 0.43 | -0.35 | -1.07 | -1.89 | 0.32 | 0.65 | 0.11 | 0.1 | 1.19 | 0.19 | 0.39 | 0.47 | 0.29 | -1.5 | 0.57 | -0.54 | 0.84 | -0.07 | 0.43 | -0.01 | 0.05 | -1.77 | -2.37 | -1.98 | - | - | - | - | 0.28 | -0.45 | 0.11 | -1.74 | 0.04 | 0.26 | -0.01 | 0.71 | -1.09 | -0.25 | -1.15 | |
| 0.46 | -1.07 | -1.06 | -0.42 | -0.49 | -0.62 | -1.04 | -1.05 | -0.46 | -0.33 | -1.4 | 0.63 | 0.64 | 0.52 | 0.4 | 0.38 | 0.77 | 0.77 | 0.81 | 0.01 | -0.16 | 0.85 | 0.55 | -0.57 | 0.89 | -0.49 | -1.1 | -3.64 | 0.93 | 0.83 | 0.73 | 0.86 | 0.48 | -0.18 | 0.7 | 1.06 | 0.71 | -1.78 | 0.11 | -0.77 | 0.5 | -0.5 | 0.69 | 0.7 | 0.62 | -2.48 | -2.21 | -2.55 | - | - | - | - | 0.83 | 0.39 | -0.27 | -2.01 | -0.63 | 0.24 | -0.53 | 0.46 | -0.94 | 0.24 | -1.13 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.