Heatmap: Cluster_31 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
0.11 -0.02 0.25 0.53 -1.01 0.81 -2.85 -0.43 0.14 -0.21 1.16 -1.35 -0.25 1.12 0.52 1.01 -1.21 0.78 0.58 -0.23 -1.01 - - - - - -0.06 0.4 0.63 0.84 -1.19 1.82 -0.58 0.01 0.54 0.63 0.7 -0.75 1.13 -0.25 0.42 0.42 -0.42 -0.95 1.6 -0.6 -0.55 -0.17 -2.98 - -2.49 - -0.78 1.48 0.02 -2.24 -0.54 -1.08 0.37 -0.57 -0.55 -0.55 0.04
-2.64 0.07 0.07 3.87 -1.16 -1.2 1.7 0.43 0.2 -1.66 -0.68 - - 0.47 -1.15 -0.33 - - -2.08 - - - - - - - 0.18 1.81 - - -0.11 0.23 -0.18 -1.17 - -1.74 -0.31 1.09 1.42 -0.16 1.15 -1.17 0.84 -0.48 0.57 -0.79 -0.74 -0.77 - -0.35 0.5 1.28 0.63 -0.39 - -0.83 -1.12 0.4 -1.23 - 1.45 - -
0.6 1.8 1.83 -0.79 -0.78 -0.3 -1.55 -0.4 -0.72 -0.48 -0.2 0.01 -0.12 1.43 -0.03 1.3 -0.6 0.56 -0.09 0.43 -0.63 - - - - - -0.9 -2.11 -0.03 0.01 -0.31 1.45 0.03 -0.61 -0.22 -0.04 0.69 -1.28 0.63 0.12 -0.24 -0.12 0.44 -0.3 1.84 -1.52 -1.47 -1.24 -2.9 -5.01 -3.74 -6.37 0.08 1.75 0.32 -1.49 -0.29 -0.63 -0.71 -0.2 0.42 0.14 0.37
-1.37 -0.41 -1.52 -0.24 -2.03 -1.29 -2.26 -0.16 -0.73 -1.27 -1.86 -3.71 -2.03 -0.14 -2.02 -0.18 -2.31 0.84 -1.48 1.71 -0.05 - - - - - -0.51 1.29 -1.05 -1.35 -1.68 0.22 0.96 -1.03 -1.89 -1.23 -0.75 1.2 1.74 1.24 0.34 1.9 -2.19 -3.35 0.4 1.63 1.55 2.27 -0.43 - -0.95 - -1.67 -0.65 0.75 0.98 -0.73 0.6 -0.41 -0.03 -1.74 1.68 -0.34
-0.11 0.34 0.44 0.67 -0.22 0.01 0.04 0.1 -0.38 -0.0 0.35 -1.52 -1.7 0.84 -1.53 0.89 -0.75 0.42 -1.01 0.66 0.36 0.38 0.2 -1.49 0.48 -0.55 0.58 -0.33 -1.48 -0.87 -0.98 0.8 0.68 0.52 -1.16 -1.04 -0.4 -1.26 -0.1 0.5 0.96 1.21 -1.2 -1.06 0.85 0.55 -0.1 0.46 -4.85 -5.21 -2.11 -3.83 -0.74 -0.27 -0.05 -0.75 0.69 0.46 0.58 0.2 0.16 0.06 0.27
-0.69 0.14 0.1 -1.29 -0.03 0.15 -0.13 -0.2 -0.07 -0.29 -0.39 -0.31 -0.38 0.17 -0.38 0.21 -0.45 0.45 -0.39 0.47 0.21 1.2 1.1 -0.39 0.94 -0.08 -0.03 -0.55 -0.67 -0.48 -0.42 -0.29 0.46 0.08 -0.34 -0.4 -0.84 -0.23 0.84 0.38 0.42 0.57 -0.41 -0.44 0.01 -0.17 -0.02 -0.24 -1.72 -2.69 -1.63 -2.67 -0.3 -1.59 0.25 -1.03 0.08 0.54 0.23 0.8 0.79 0.84 0.56
-0.93 -0.6 -0.38 -1.3 -1.72 -0.37 -1.13 -1.02 -1.18 -0.87 0.09 -1.18 -1.35 0.44 -1.64 -0.11 -1.11 -0.37 -1.11 0.55 -0.47 0.65 1.0 -1.28 0.47 -0.56 0.09 0.57 -1.12 -1.08 -1.46 0.05 0.62 -0.89 -0.94 -1.16 -0.96 1.4 0.7 1.53 0.01 1.4 -0.63 -0.96 0.19 1.16 0.53 1.21 -0.56 -5.95 -0.92 -5.15 -0.92 0.96 -0.08 -0.35 -0.15 0.34 -0.65 0.92 0.96 0.83 0.83
-3.56 -1.03 -1.03 0.29 -2.21 -2.45 -1.98 -1.2 -1.21 -2.09 -0.78 -3.44 -2.07 0.81 -2.49 0.18 -4.04 -0.6 -1.19 1.75 0.49 1.3 1.27 -0.81 0.08 -0.77 0.81 0.63 - -2.6 -3.02 -0.68 1.91 -3.08 - -1.57 -0.86 0.18 1.97 -0.07 0.49 1.17 -2.24 -2.39 0.16 1.9 0.68 0.65 - - - - -2.55 -1.05 -0.48 -1.74 -1.03 1.78 0.19 1.09 -0.05 2.04 -0.05
-2.75 0.96 -2.02 1.84 -0.92 -1.12 -1.1 -2.31 -0.43 -1.15 -0.78 -0.63 -2.26 0.02 -2.27 1.45 -2.22 1.58 -1.18 1.07 - - - - - - -0.42 2.44 -0.15 -0.25 - 0.95 -0.28 0.73 - - 0.57 1.75 0.73 - 0.31 -1.26 -2.44 - 1.73 -0.86 2.35 1.72 -0.67 - 1.4 -0.24 -0.71 0.24 -1.25 -0.94 - -0.28 -0.33 -1.27 -1.24 -0.24 -
-0.68 -0.82 -0.95 0.73 -0.14 0.72 0.01 0.46 -0.1 0.07 0.06 -1.07 -0.2 1.02 -1.05 0.79 0.43 -0.23 0.41 0.83 0.16 -1.72 -1.46 - -1.86 -1.94 0.52 -0.54 -0.82 -0.29 -0.99 0.47 -0.53 0.07 -1.14 -0.95 -0.92 -1.29 1.34 0.74 0.18 1.01 0.13 0.01 0.87 -1.53 0.09 -0.78 -1.6 -3.29 -0.26 -3.07 -0.39 -1.44 1.2 -3.18 0.91 0.51 -0.25 0.66 0.1 1.46 0.74
-1.17 -1.98 -0.98 0.79 -1.52 -1.18 -1.98 -0.84 -0.63 -1.55 -1.09 -0.75 -0.88 0.89 -1.58 1.19 -0.59 0.31 -0.67 1.42 -0.09 0.27 0.43 -2.51 -0.77 -2.63 -0.65 -0.1 -0.57 -1.06 -1.01 -0.18 0.06 -1.22 -1.79 -0.9 -0.12 -0.55 1.23 0.87 -0.31 1.37 -0.31 -0.95 0.76 0.7 0.57 0.41 0.21 -1.99 1.31 -0.77 -0.58 1.06 0.83 0.7 0.28 0.06 -1.13 0.13 0.03 0.54 0.88
-2.62 -0.71 -1.12 -2.16 -2.62 -0.51 -3.29 -0.84 -2.42 -2.0 -3.46 -4.31 -4.94 2.93 -4.95 2.72 - 1.49 -4.86 -1.11 -2.97 - - - - - -0.78 -1.24 - -4.59 - 2.65 -1.37 - -3.53 - -2.02 - -1.63 1.64 - 2.56 -5.12 -4.94 3.05 0.36 -0.19 -0.74 - - - - -5.71 -0.62 -1.61 -2.62 - -2.08 -2.42 -1.95 2.63 -0.6 2.18
-3.04 -0.89 -1.24 -1.45 -3.02 -0.49 -3.07 -1.08 -2.72 -2.04 -2.27 -5.51 -8.14 1.53 -6.56 1.53 -8.11 1.03 -5.28 0.43 -2.92 -4.93 -4.82 -8.54 -5.96 -7.55 -0.07 -0.23 -6.05 -4.39 -4.37 1.52 -0.07 -2.39 -6.81 -6.03 -2.35 -2.53 -0.72 2.27 -0.99 3.29 -3.85 -6.14 1.71 0.75 0.57 0.31 - - - - -4.4 -1.47 -1.0 -1.91 -2.72 0.08 -2.16 -0.53 3.08 0.61 2.81
-0.41 -0.37 -0.16 0.67 -1.74 -0.73 -1.85 -0.59 -1.17 -1.2 -0.48 -0.29 -0.89 0.53 -0.87 1.17 -0.59 0.87 -0.76 1.41 0.06 - - - - - -0.73 -0.14 -0.83 -0.99 -0.1 1.11 1.49 0.2 -1.11 -0.29 0.06 0.23 1.08 0.13 -0.07 1.08 -0.21 -0.48 1.52 0.68 0.1 -0.35 -2.74 -2.7 -2.52 -1.89 -0.3 0.48 1.56 -0.69 -0.81 0.51 -0.66 0.12 0.39 1.53 0.52
0.04 0.85 0.6 - -2.67 -2.6 -5.1 -1.36 -2.12 -3.11 -2.51 -1.78 -0.69 1.35 -2.99 1.72 -1.37 0.29 -0.69 0.19 -1.7 - - - - - -0.55 0.97 -2.88 -1.98 -2.12 1.04 -0.2 -0.0 -1.74 -1.72 -0.03 1.58 -0.19 0.4 -1.43 0.64 -1.47 -1.13 1.62 1.91 1.61 1.62 - - -2.92 -3.56 -1.69 2.38 -0.29 1.33 -0.65 -0.27 -1.74 0.7 1.11 0.27 0.41
-0.9 0.41 0.21 -1.72 -0.33 -0.39 -2.05 -0.86 0.23 -0.61 0.55 -1.52 -2.02 -0.04 -1.92 -0.3 -2.06 -0.17 -1.94 0.87 0.58 0.1 0.82 -0.28 -0.02 -0.86 -0.49 0.15 -1.96 -1.71 -1.96 -0.04 1.04 0.22 -2.15 -1.75 -1.25 1.55 0.71 0.23 0.65 0.49 -1.68 -1.73 0.12 0.59 0.43 0.48 -3.47 -4.67 -0.21 -2.41 -1.76 -0.1 0.91 0.6 1.26 1.13 0.91 1.25 -0.0 1.15 0.21
-3.14 -1.16 -1.73 0.35 -1.13 -0.68 -1.08 -1.11 -0.91 -1.25 0.02 -3.6 -2.66 0.93 -1.7 1.23 -2.82 1.0 -2.59 0.75 -0.37 -0.3 -0.19 -1.94 -0.51 -2.05 0.45 -0.42 -2.46 -1.98 -2.11 1.22 1.34 -0.61 -2.35 -2.6 -2.09 0.32 0.8 1.34 -0.22 1.6 -2.72 -2.42 1.09 0.53 0.4 0.43 -4.96 -4.01 -0.48 -2.53 -2.63 2.11 0.68 -0.64 0.14 0.19 -0.26 0.61 1.54 0.94 1.26
-1.23 0.46 -0.79 -0.42 -0.71 -0.31 -1.46 -0.35 0.04 -0.17 -0.47 -1.11 -1.21 1.55 -2.2 1.06 -2.16 -0.01 -1.54 0.67 -0.76 - - - - - -0.08 -0.01 -1.9 -2.21 -2.34 0.52 1.91 -0.04 -0.71 -0.98 -1.2 0.55 0.84 1.09 -0.4 2.19 -1.67 -2.13 0.89 -0.11 0.14 0.01 -0.8 -4.98 -4.12 - -1.18 0.34 0.72 -1.87 0.59 0.49 -0.36 0.55 1.82 1.25 1.57
- -5.84 - -4.31 -4.3 -2.5 -3.57 -3.05 -2.63 -2.3 -5.6 - - -1.88 -4.49 -2.66 - 0.3 - 3.3 1.9 -4.17 -3.43 -6.49 -3.21 -4.91 -0.69 1.58 - -5.74 -6.01 -2.69 3.22 1.48 - - - -0.62 0.2 2.2 0.48 2.18 -5.26 -5.99 -4.67 0.65 3.51 -0.16 - - - - -5.9 - -4.08 1.58 -3.05 -3.56 -2.83 -1.92 -3.48 -4.06 -0.99
- - - -1.51 -3.29 -2.15 -3.71 -2.81 -1.73 -1.85 - - - -1.39 - - - - - 3.98 1.98 -3.09 -2.56 -3.69 -3.04 -4.72 -1.1 0.42 -2.76 - - -2.9 3.45 1.56 - - - 0.13 -0.29 2.24 0.86 2.17 - - -1.54 -0.09 2.67 0.11 - - -2.21 -3.85 - - - 0.62 - -3.31 -2.34 - -1.27 -2.27 -0.96
-2.23 -0.5 -0.75 - -4.21 -1.21 -3.47 -1.97 -1.44 -2.65 -2.84 - -2.33 0.43 -1.31 -1.05 - - - 3.81 0.66 -2.11 -1.23 -2.72 -1.17 - -0.43 0.87 - -2.85 - -2.93 2.67 1.13 -2.99 -2.89 -1.69 -1.06 0.27 2.49 1.13 2.26 - -1.0 -2.91 0.39 2.44 0.09 - - - - -3.11 -1.44 - 0.59 -1.31 - -0.79 -2.33 0.51 -2.3 0.28
-4.03 -1.3 -1.88 -2.34 -3.32 0.17 -2.46 -1.99 -2.1 -2.19 -2.31 - -3.13 -0.24 -5.13 -1.16 -1.9 -3.27 -2.74 3.15 0.71 0.9 -1.91 -2.73 -1.94 -4.52 -0.6 1.55 -3.59 -3.14 -3.05 -1.72 2.29 1.12 -3.15 -2.58 -2.23 -0.2 0.74 2.07 1.04 2.22 -3.7 -2.8 -0.7 0.79 3.0 1.09 -2.94 -3.89 -1.45 -3.09 -3.58 - -2.52 0.3 -1.29 -3.14 -2.19 -0.95 0.37 -2.51 0.9
- -4.26 - - -4.53 -0.27 -1.37 -1.1 -2.13 -2.27 -2.99 - -1.9 -0.27 -2.46 0.24 -3.43 0.4 -2.84 3.42 0.82 -0.15 -2.82 -4.94 -4.94 -4.86 -0.15 0.23 -4.01 - - -0.27 3.27 1.04 -2.98 -3.05 -5.68 0.22 1.05 2.08 0.51 1.65 -2.06 -4.38 0.53 -1.09 2.74 0.1 - - - - -2.66 -3.24 -1.14 0.02 - -1.91 - 0.22 0.13 -0.28 0.13
-3.02 0.31 -0.54 -4.02 -3.98 -0.11 -3.05 -0.66 -2.47 -4.53 -1.93 -9.07 -6.55 0.89 -6.9 1.33 -5.86 0.55 -6.18 -1.73 -2.45 - - - - - 1.19 1.17 -6.42 -7.3 -7.06 1.49 -1.12 -2.27 -7.29 -5.85 -4.22 -1.36 -1.72 0.83 -1.51 1.0 -6.71 -5.4 1.4 2.54 3.09 3.2 - - - - -5.44 2.32 -2.55 1.36 -2.01 -2.14 -2.17 -1.25 1.34 -2.31 0.65
- -1.02 -2.34 -1.8 -4.53 -2.3 -5.0 -3.0 -5.05 -6.05 -1.4 - -5.6 2.22 - 2.01 - 0.8 -5.5 -1.41 -2.61 - - - - - 0.36 0.05 - -4.11 -5.5 2.2 -0.13 -3.0 - - -5.73 -0.33 -1.78 1.49 0.16 2.61 -5.75 -4.0 2.08 1.51 1.18 1.25 - - - - -5.35 3.25 -2.99 -1.45 -1.23 -1.03 -2.05 -0.26 2.17 -1.75 1.27
-1.22 0.73 0.73 - 0.38 -0.76 -1.6 0.35 0.02 -0.44 0.75 - -2.34 1.3 0.5 1.52 0.52 1.29 0.76 -0.28 0.24 - - - - - 0.34 0.65 -1.86 - 0.54 1.26 1.67 -1.33 -1.99 -1.89 -0.17 - -1.32 -0.32 2.26 0.25 -2.49 -2.32 1.68 0.64 2.11 0.67 - - - - -1.08 - 1.01 0.59 0.31 -1.46 - - 0.29 -1.3 -1.28
-3.45 - -2.4 -0.38 -3.38 -0.38 -3.25 -1.04 -1.95 -1.13 -2.48 -3.33 -2.16 -0.09 -1.51 -0.24 -2.12 -0.35 -1.73 0.76 -1.67 -0.96 -1.27 -2.59 -0.77 -1.67 1.59 0.74 -2.92 -2.17 -1.91 -0.11 0.83 -1.97 -1.8 -1.88 -3.58 1.34 2.12 0.04 0.02 1.62 -2.13 -1.44 0.15 1.47 0.37 0.89 -3.37 -3.74 - -3.52 -2.75 0.84 1.13 0.36 -0.61 1.48 -2.03 2.05 1.34 2.14 1.51
0.09 2.03 1.73 -0.25 -1.46 -0.78 -1.61 -0.97 -0.28 -0.77 0.84 -0.86 -1.5 0.04 -1.6 0.49 -1.12 -0.0 -1.39 0.95 0.28 - - - - - 0.03 -0.94 -1.2 -1.13 -1.4 0.24 0.66 0.26 -1.38 -1.0 0.19 -0.19 0.94 0.77 0.04 1.26 -1.7 -1.25 0.27 0.36 -0.22 0.21 -3.87 -4.56 -1.18 -3.53 -1.42 1.71 0.51 -1.29 0.36 0.65 0.01 0.54 0.97 1.17 1.3
-1.94 0.31 -0.14 -1.36 -2.62 -1.9 -2.33 -1.7 -2.02 -2.26 0.81 -2.55 -2.96 0.87 -2.67 0.75 -3.36 1.11 -2.92 1.0 -0.5 0.47 1.23 -1.11 -0.62 -1.29 0.01 0.76 -3.21 -2.6 -2.8 1.01 0.82 0.11 -3.03 -2.69 -1.79 -1.07 -0.24 0.77 -0.16 1.62 -1.86 -3.14 1.2 1.56 1.48 1.5 -5.17 -1.96 1.54 -0.26 -2.62 1.39 -0.55 -0.85 -0.73 -0.19 -0.57 -0.43 0.9 0.39 0.89
-1.28 - 0.03 - - - - - - - - - -1.82 3.46 -1.8 2.55 0.25 2.48 - - - - - - - - - - - -1.44 - 2.06 - - - -1.22 0.96 - - - - - - -0.79 3.54 - - - - - - - - 4.19 - - - - - - - - -
0.4 1.25 1.02 0.95 -0.72 -0.1 -1.54 -1.15 -0.04 -0.52 1.12 -1.67 -0.94 0.39 -1.49 0.52 -1.39 0.16 -0.94 0.86 -0.24 -3.92 -2.99 -5.48 -5.25 -5.69 0.66 0.15 -1.3 -1.0 -1.04 0.61 0.59 -0.59 -1.1 -0.77 -0.11 -0.2 1.05 0.38 0.55 1.07 -1.27 -1.13 0.67 0.49 0.55 0.65 -1.75 -5.08 0.13 -1.79 -1.42 0.55 0.38 0.46 0.24 -0.16 -0.26 0.36 0.96 0.81 0.78
-1.26 -1.93 -2.61 -0.8 -0.94 0.08 -0.94 -1.11 -0.95 -1.19 -4.68 -1.95 -1.85 0.72 -1.17 0.99 -0.73 0.92 -1.4 0.24 -0.28 - - - - - -0.13 -0.2 -0.16 -0.36 -2.11 1.23 0.52 -0.09 -1.21 -0.4 -1.1 0.29 0.96 1.51 -0.1 1.83 -5.34 -3.48 1.79 -0.2 0.51 0.14 - - - - -3.63 1.28 0.89 0.55 -2.55 1.59 -1.91 1.8 1.92 1.28 1.02
-0.45 0.44 0.19 -2.08 -1.44 -0.54 -2.03 -1.15 -0.81 -1.35 1.08 -2.28 -2.52 0.52 -2.32 0.34 -2.56 0.09 -2.38 0.86 0.05 -0.12 0.43 -1.16 -0.68 -1.53 0.4 0.09 -2.61 -2.16 -2.58 0.08 0.94 -0.74 -2.15 -1.93 -0.11 0.3 0.84 0.91 -0.39 1.42 -1.99 -2.44 0.44 0.74 0.78 0.37 -4.1 -6.06 -0.27 -3.52 -2.04 1.15 0.89 -0.26 0.62 0.85 0.52 0.92 1.26 1.29 1.63
-1.5 -1.09 -1.0 -0.78 -1.72 -0.39 -0.98 -0.78 -1.42 -1.1 -0.79 -1.02 -0.23 1.49 -0.39 1.08 -0.52 0.96 0.06 -0.5 -0.94 0.28 -0.56 -1.29 -0.51 -1.57 0.71 0.46 -0.9 -0.66 -0.23 1.18 -0.67 -0.53 -0.95 -0.44 0.32 -1.75 -0.04 1.08 -0.44 0.91 0.32 -0.18 1.4 0.25 0.73 -0.12 -0.88 - -4.48 -4.54 -0.05 2.63 -1.23 -0.48 -0.68 -1.19 -0.92 -0.48 1.31 -0.15 0.95
-2.96 - -1.92 -1.12 -1.67 -1.84 -1.27 -1.52 -1.14 -1.76 -2.0 -1.26 -0.32 1.82 0.04 2.08 -0.12 1.69 0.29 -0.87 -1.93 -0.85 -1.11 -0.6 -3.77 -1.89 0.62 -0.77 -0.65 -0.01 -0.17 1.59 -0.17 -0.68 -0.62 -0.69 0.76 -0.67 -1.16 1.38 -1.49 0.42 0.21 -0.36 1.69 -0.3 0.28 -0.49 -3.89 - - - -0.06 2.97 -1.47 0.3 -0.65 -3.62 -0.96 - 1.19 -0.65 0.69
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.