Heatmap: Cluster_10 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
- - - - - - - 5.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-5.87 -5.47 -4.34 - 2.05 0.68 -0.2 5.12 1.26 3.54 -2.53 -8.87 -3.47 -6.01 -2.72 -5.36 -3.61 -6.79 -3.13 -6.42 -3.99 -2.26 -2.58 -2.95 -11.78 -7.69 0.36 -3.5 -2.62 -1.96 -3.93 -6.1 -4.17 -6.84 -2.53 -2.09 -3.08 0.44 -4.87 -4.13 -5.73 -4.39 -4.28 -4.16 -6.9 -3.16 -5.3 -3.11 - - - - -4.13 -5.72 -4.57 -1.29 -3.48 -3.43 -3.25 -3.16 -1.6 -3.13 -1.02
-5.42 -5.91 -4.52 - 1.64 0.56 -0.38 5.03 0.9 3.61 -2.31 -7.36 -2.54 -4.7 -1.84 -3.64 -2.84 -5.01 -2.23 -6.24 -3.56 -1.34 -1.03 -2.9 -11.76 -6.35 0.91 -4.56 -1.74 -1.26 -2.99 -5.27 -5.65 -6.59 -1.67 -1.33 -2.17 -1.27 -5.84 -2.85 -7.4 -2.98 -2.78 -3.02 -5.43 -4.46 -5.75 -4.24 - -12.17 -9.73 -10.36 -2.82 -5.3 -3.32 -1.89 -2.67 -2.65 -2.42 -1.87 -0.31 -2.0 0.33
- - -1.24 0.3 -0.86 - 3.67 2.31 1.24 -1.88 1.32 - -1.51 1.81 - 1.94 - -1.22 - - -0.52 - -1.91 - - - -0.32 - - -1.14 - 0.91 0.5 -0.49 - - 0.33 - 0.51 1.51 -0.49 0.5 -1.65 -0.44 0.94 0.91 0.94 0.92 - -1.26 - - -2.26 1.28 -0.48 - - 0.44 - -0.49 - 0.54 -
2.39 3.12 - - - - - - - - - - - - - - - - 3.96 - - - - - - - - - - - 2.92 3.26 - - - - - - - - - - - 2.88 - - - - - - - - - 3.17 - - - - - - - - -
2.21 2.55 2.41 0.61 0.61 0.85 -0.03 -0.64 -0.03 0.18 0.08 -1.53 -0.26 0.06 -0.39 0.72 -0.28 -2.63 -0.26 -2.47 -0.05 -0.22 -0.55 -0.75 0.14 -0.74 -0.97 0.36 0.33 -0.73 -0.34 0.43 -2.5 -1.17 0.08 -0.51 1.49 0.43 -0.49 -0.68 -0.92 -0.68 -0.96 -0.53 -0.27 -0.78 0.27 -0.76 - - - - -1.27 1.04 -3.48 -0.58 -2.46 -0.98 -1.97 -0.68 -0.14 -0.66 -0.87
1.65 1.93 1.93 0.36 1.45 1.15 1.23 0.46 1.21 1.04 0.47 -0.41 -0.19 -1.45 0.24 0.13 0.13 -3.47 -0.15 -1.39 -1.31 -0.6 -0.69 -0.75 -0.68 -0.72 -0.34 -1.19 0.18 -0.25 -0.43 -0.59 -2.17 0.06 -0.24 -0.5 1.76 -1.07 -0.66 -0.65 -0.51 -0.5 0.04 -0.51 -0.93 -0.89 -0.5 -1.53 -5.15 - -1.66 - -0.4 0.34 -0.56 -0.33 -0.01 -1.4 -0.81 -0.5 -0.26 -1.26 -0.49
0.43 0.73 1.03 0.11 -1.05 -1.04 -0.95 0.08 0.56 -1.09 - -1.03 -1.1 - -1.65 -0.41 -1.63 - - -0.65 1.11 - - - - - -0.08 -0.29 -2.14 - -2.59 0.07 2.13 0.65 -1.17 -0.6 -0.62 1.56 0.33 -0.08 1.49 0.92 -2.84 -2.67 -1.24 - - -0.27 -1.07 - -0.0 -1.22 -3.48 - 2.04 -0.34 -0.65 2.49 -1.72 1.91 1.53 1.68 0.68
-2.79 -2.05 -3.64 2.99 -0.46 -3.74 -0.44 -1.25 0.08 -2.56 - -1.25 -1.57 - -3.87 -2.63 -2.83 - -3.8 2.53 -2.91 - -3.15 -2.3 -2.3 -3.29 - - -3.42 - -3.8 - 2.57 0.11 -1.91 -2.45 -3.51 - 0.92 - 1.86 -2.88 -1.73 -2.78 - - - - 3.88 -0.33 3.1 -0.27 -2.66 -2.59 -0.87 - -1.87 0.03 -2.94 0.11 -2.86 0.46 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-9.92 -9.18 - 3.0 0.89 0.22 2.58 2.11 -0.59 1.68 1.14 -0.95 -2.06 -6.34 -0.65 -4.85 -1.46 - -1.2 -1.66 -1.79 -0.79 2.7 1.25 -1.69 2.53 1.13 -2.91 -1.85 -1.8 -1.73 -7.02 -0.48 -4.26 -1.4 -1.41 -2.61 -3.75 -0.06 -4.43 2.14 -5.62 -0.51 -1.77 -6.19 -3.59 -2.67 -2.94 -4.93 -9.2 -6.76 -7.99 -0.7 -8.19 -0.63 -1.66 -1.72 0.23 -1.54 0.54 -4.16 -1.09 -4.18
-9.93 -10.23 -10.21 2.08 0.72 0.35 2.56 2.28 -0.42 1.91 2.8 -1.91 -3.17 -5.06 -1.51 -4.66 -2.69 -5.52 -2.2 -1.01 -2.32 -0.7 1.94 1.6 -1.65 2.34 1.83 -0.93 -2.74 -2.64 -3.15 -8.06 -0.92 -5.45 -2.56 -2.37 -3.14 -1.83 0.34 -4.86 1.9 -4.09 -1.52 -3.01 -6.21 -1.11 -1.69 -1.62 -7.27 -10.22 -7.04 -8.42 -1.78 -6.09 -0.34 -1.02 -2.01 -0.06 -2.11 1.07 -3.96 0.19 -4.07
-2.07 0.63 -1.36 2.2 1.14 -1.44 3.28 4.02 -0.48 -0.48 0.9 0.05 - - - - - - - 1.02 -0.62 - - - - - 0.69 - -1.06 -1.24 -0.51 - 0.4 -0.59 - -0.08 0.95 -0.39 -0.59 -0.59 -0.61 - -0.75 - -0.17 -0.19 - - - - - - -0.36 - -0.58 0.75 - 1.27 - - - 1.02 -
-3.27 - - -1.31 0.49 -0.72 -3.14 2.0 2.49 0.89 -0.91 -1.21 -1.71 -0.75 -1.39 -0.32 -0.84 -0.28 -1.03 0.09 -0.59 2.07 3.25 -2.82 -2.0 -2.12 -0.7 -0.46 -1.51 -1.29 -2.85 -0.24 0.7 -0.85 -0.8 -0.75 -0.05 -0.41 0.9 -1.63 0.1 -1.01 -1.56 -1.81 -0.72 -0.9 -0.02 -1.37 -2.18 -5.87 -4.02 -4.65 -1.49 -1.93 1.84 -0.45 -0.21 0.73 -1.99 1.51 -2.07 0.35 -1.18
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- -0.48 -1.46 3.67 -1.07 - 3.21 2.07 -2.15 -0.02 0.37 -1.07 -1.72 - -0.69 - 0.34 - - - - - - - - -2.08 -1.28 - - - - - - - -0.29 -1.27 0.26 - - - - - - - - - - - 2.06 0.52 1.96 1.74 0.12 3.39 -0.69 -0.38 - - - 0.3 - - -
-2.79 -2.93 -3.35 -7.54 -1.27 0.46 -2.12 0.43 -1.05 -0.36 0.83 -4.07 -4.57 0.39 -4.19 0.67 -3.99 0.02 -3.78 1.48 -0.38 -0.4 -1.7 -4.13 -2.07 -4.39 -0.25 0.04 -4.3 -3.42 -3.84 -0.02 1.69 -0.69 -3.84 -3.36 -2.6 1.85 1.54 1.3 1.38 1.45 -3.63 -4.05 0.11 0.55 0.08 0.13 -4.0 - -3.72 -8.88 -3.9 -0.7 1.76 0.97 0.36 1.22 -0.7 1.31 1.16 1.59 1.33
3.14 2.35 2.62 -1.49 -0.08 0.44 -0.64 -0.52 0.2 -0.57 -0.1 -0.92 -1.69 -1.62 -0.79 -2.23 -0.86 -1.06 -1.06 -0.35 -0.24 -2.29 -2.9 -3.34 -1.76 -4.47 0.06 0.01 -1.51 -0.85 -0.8 -1.22 0.08 0.01 -0.88 -0.96 1.83 -0.1 0.35 -0.55 -1.0 0.59 -1.44 -1.31 -1.95 0.4 -0.94 -0.42 -2.9 - -3.0 - -1.27 0.77 -0.11 0.01 -0.29 -0.84 -0.14 0.35 0.95 -0.2 -0.98
-0.12 -0.31 -0.26 -3.57 0.06 0.04 -0.61 -0.19 -0.16 -0.43 -1.34 0.24 -0.47 -0.38 -0.74 -0.27 -0.57 -0.34 -0.29 0.93 0.94 -2.2 -0.43 -1.23 -1.69 -0.78 -0.83 1.19 -0.61 -0.15 -1.04 -0.45 0.99 0.55 -0.4 -0.42 0.09 1.23 1.22 0.35 1.51 0.76 -0.58 -0.96 -0.19 1.13 1.27 0.67 -5.34 - - - -0.38 0.28 0.28 0.48 -0.31 -0.27 -0.15 0.65 0.17 0.11 -0.08
1.79 - - 5.06 - - - - 1.83 - - - - - - - - - - - - - - - - - - - - - - 2.66 - - - - 2.1 - - - - - - - 2.69 - - - - 2.5 - - - - - - - - - - - - -
-0.91 -1.22 -1.2 1.35 -0.8 -0.29 3.28 1.52 -0.88 -0.96 2.22 - -0.44 1.17 - 0.82 -1.38 - - 1.18 -0.46 - - - - - 0.03 - - -1.08 - -0.05 0.55 - -1.1 - -0.61 -0.18 - -0.43 1.14 -0.43 - - 1.31 - - - 1.74 -1.21 2.82 - -2.24 - -0.42 -0.1 - - 2.31 - -0.41 -0.41 -
-1.79 -2.62 -2.63 -4.85 1.32 0.85 0.29 3.2 0.67 1.81 1.63 -4.33 -1.88 1.15 -1.19 1.32 -1.48 0.74 -0.48 -2.94 -1.88 1.35 2.74 -2.29 -3.66 -2.18 1.25 -4.5 -2.02 -1.21 -1.76 0.66 -2.09 -1.74 -1.46 -0.95 1.37 1.34 -3.57 -0.63 -4.77 -0.3 -3.21 -1.7 0.87 -3.5 -1.57 -2.68 - - - - -1.48 -0.76 -3.74 1.5 -3.09 -4.13 -3.42 -3.08 -1.12 -3.94 -1.42
- 5.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-2.26 -1.42 -2.05 3.27 0.52 -0.17 0.18 0.2 1.27 -0.28 -1.42 -2.14 -1.76 1.22 -1.55 1.37 -1.49 1.65 -1.43 -1.03 0.23 -0.13 -0.94 -1.97 -0.54 -1.01 -0.24 -1.02 -1.47 -1.37 -1.68 1.66 -1.01 0.46 -1.19 -1.03 -1.54 -2.02 -0.7 -0.18 -0.22 -1.0 -1.06 -1.8 1.53 -1.55 -1.29 -1.18 -0.7 0.66 -0.88 0.78 -1.48 2.0 -1.11 -1.08 -1.6 -1.56 -1.09 -0.22 -0.83 -0.37 -1.35
-0.45 0.68 0.05 -2.94 -1.11 -0.19 -1.2 -0.36 -0.31 -1.77 0.67 -2.08 -1.4 1.16 -1.4 0.62 -0.87 -0.37 -0.32 1.51 -0.42 - - - - - -0.45 0.37 -2.24 -2.31 -1.06 1.38 1.27 -2.14 -2.3 -1.91 -0.31 -0.15 0.67 1.04 0.59 1.14 -1.08 -2.34 2.33 0.92 1.18 1.54 - - - - -1.1 0.7 -0.01 1.07 0.01 0.33 -0.97 0.86 0.11 0.63 -0.12
-2.28 -1.55 -1.75 -3.36 -2.75 -0.92 -2.37 -1.15 -1.82 -1.75 -0.58 -4.28 -3.99 -0.08 -4.14 0.21 -3.73 -0.57 -3.34 0.83 -1.34 -2.68 -2.68 -5.0 -3.72 -4.96 0.25 3.83 -4.65 -4.62 -4.14 -0.3 0.75 -1.32 -4.63 -3.78 -2.57 0.08 0.05 1.21 0.9 1.1 -3.47 -3.39 -0.14 2.0 2.31 1.02 -3.09 - -0.84 -7.28 -3.58 -2.07 -0.22 0.27 -0.86 -0.02 -1.19 0.18 1.78 0.08 1.93
-2.35 -0.61 -0.04 - -0.83 -0.79 -2.28 2.83 0.01 -2.33 -1.37 0.78 -0.88 1.76 -0.86 2.99 -0.82 0.99 - -0.85 - 0.07 1.23 0.72 -0.18 -1.29 -0.2 - -1.39 0.2 - 2.14 1.13 -0.87 0.06 0.65 -2.07 -0.6 1.46 - 0.13 -0.85 -2.03 0.76 1.56 - - - - - - -1.41 -0.63 -1.56 - - -0.84 - - 1.47 - -0.83 -
1.34 - 2.05 3.6 - - - 0.57 - - - 3.45 - - 1.81 - - - - - - 1.46 - - - - 1.76 - - - - - - - - 2.4 - - - - - - - 2.92 - - - - - - - - 1.05 - - - - - - - - 2.84 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.8 - - - - - - - - - - - - - 5.13 - - - - - - -
- - - 4.61 - - - - - - - - - - - - - - - - - - - - - - - - 3.36 - - - 4.82 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 5.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - 4.4 5.39 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.08 -0.37 -0.26 -0.32 0.3 -0.19 -0.02 -0.15 0.34 -0.14 0.02 0.99 0.16 -0.36 -0.12 -0.37 -0.03 -0.66 0.32 -0.6 0.45 1.08 1.74 0.63 1.55 0.56 -0.71 -2.0 -0.04 0.12 0.05 -0.36 0.23 0.24 0.04 0.06 -0.02 -0.89 -1.24 -1.47 1.12 -1.06 0.78 -0.0 -0.41 -3.19 -2.94 -3.81 0.53 -0.2 0.97 0.87 0.63 -2.29 -0.8 -1.2 -0.78 -0.25 -0.62 -0.73 -1.17 -1.41 -2.08
- - - 2.67 -0.13 - 5.01 2.84 - - - - - - - - - - - - - - - - - - 0.77 - - - - 3.28 - - - - - - - - - - - - - - 2.32 - - - - - - - - - - - - - - - -
-2.09 -2.16 -1.94 -3.4 1.47 -0.17 -2.06 2.02 1.39 -0.76 -1.62 -2.58 -4.2 -4.14 -3.15 -3.66 -4.03 -4.25 -3.51 1.17 0.03 -0.91 1.34 -3.25 -2.09 -4.62 -0.81 1.49 -3.78 -3.2 -4.09 -3.84 0.52 0.29 -3.91 -3.39 -1.57 3.35 1.16 -1.13 -0.47 -1.08 -3.08 -4.76 -4.03 0.44 0.77 0.14 -9.31 -10.67 -7.4 -6.72 -4.24 -3.92 1.78 2.48 -0.27 1.3 -0.69 1.15 -0.14 0.23 -0.77
0.06 -0.01 0.08 -0.29 -0.28 -0.31 -0.22 -0.09 -0.2 -0.12 -0.5 -0.44 -0.43 -1.15 -0.59 -0.69 -0.4 -0.93 -0.21 0.35 0.59 1.07 0.3 0.05 0.92 -0.1 -0.46 -0.06 -0.18 -0.31 -0.43 -0.84 0.39 0.29 -0.18 -0.05 -0.05 0.06 0.71 -0.7 1.57 -0.62 -0.34 -0.52 -0.92 -0.3 -0.03 0.02 -1.6 -0.62 0.01 0.15 -0.51 -1.15 0.31 0.58 0.41 0.7 0.59 0.86 -0.45 0.54 -0.67
-0.91 1.73 2.08 - 0.28 0.56 1.45 1.94 -0.19 2.32 -0.67 - -2.74 - - 0.51 -2.69 - -1.67 -0.15 - -2.15 - -1.16 -2.21 -3.12 -0.68 0.96 - -2.27 -2.69 -2.33 - -0.75 - -2.16 1.49 -0.49 -0.74 - -1.76 -0.74 -2.91 -2.74 -0.74 - -1.31 2.57 - -2.52 3.24 - -0.52 - -0.15 2.05 0.61 - -1.8 - -0.72 -1.72 -0.12
-8.78 -9.1 -9.26 -0.26 -8.33 -9.05 -8.4 -4.9 -3.72 -10.24 -8.77 -9.45 -8.66 -7.39 -7.95 -7.31 -8.67 -7.33 -8.83 2.85 -3.65 -6.24 -11.73 -11.96 -9.52 -10.55 -7.7 -5.97 -9.7 -9.12 -8.93 -7.32 3.21 -4.27 -9.05 -7.96 -9.04 -5.09 3.31 -5.26 2.94 -3.63 -11.9 -8.79 -7.14 -6.52 -5.9 -7.01 -5.77 -6.18 -3.92 -5.05 -11.24 -7.41 2.54 -5.65 -4.8 2.9 -4.38 2.88 -5.78 2.74 -5.0
- -1.78 - 2.37 - - - - - -2.33 - - - 1.29 - - - - - 3.55 - - - - - - - - - - - - 3.16 - - -1.42 - - 2.81 - 1.57 0.01 - - -1.57 - - - - - - - - 0.55 1.82 - -0.95 1.28 - 2.58 -0.98 3.03 -
-2.94 -1.8 -1.8 1.44 -1.45 -0.5 -1.94 -1.13 -1.04 -1.89 -1.97 -1.82 -1.74 0.37 -1.63 0.82 -1.89 1.0 -1.24 2.0 -0.56 -3.69 -2.02 -3.75 -3.02 -3.74 -0.51 -0.24 -1.33 -1.52 -1.32 0.33 2.19 -1.31 -1.5 -1.96 -1.37 -0.8 2.55 -0.72 0.79 -0.38 -1.15 -1.49 0.32 -0.53 -1.02 -0.76 -4.03 - -4.55 -4.18 -1.16 1.19 2.29 -0.84 -0.89 1.59 -0.69 1.88 -1.6 2.24 -1.62
-2.27 -1.97 -1.82 1.62 -1.97 -0.99 -4.65 -2.06 -3.24 -1.52 -2.57 -1.74 -1.21 0.57 -2.56 -0.12 -1.88 0.15 -1.22 2.17 -1.07 - - - - - -0.78 -0.66 -1.57 -1.51 -2.31 0.48 2.17 -3.38 -1.02 -1.89 -1.41 -0.06 2.57 -1.2 1.37 -1.2 -1.29 -2.3 -0.2 -0.4 -0.94 0.03 - - - - -1.76 1.17 1.87 -0.05 -0.54 2.11 -1.11 2.16 -1.54 2.62 -1.03
- - - - - - 5.09 4.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.