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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -1.97 | 1.44 | 0.52 | - | -0.4 | -0.02 | -0.88 | -0.39 | -0.02 | -0.99 | -0.19 | -1.26 | -1.17 | 0.35 | -0.38 | 1.01 | -1.44 | 1.35 | -0.95 | -0.76 | 0.14 | - | - | - | - | - | 1.58 | -0.4 | -0.66 | -0.68 | -0.95 | 1.36 | 0.21 | 0.68 | -4.06 | -3.47 | -1.31 | 0.27 | 0.16 | 1.41 | -1.33 | 1.4 | -1.56 | -1.83 | 1.26 | -0.5 | 0.41 | 0.68 | -4.89 | -5.25 | -4.4 | - | -1.8 | 2.5 | -1.47 | 0.1 | 0.35 | -1.01 | 0.71 | -0.67 | 1.71 | -1.65 | 0.96 | |
| -0.25 | -0.12 | 1.17 | -0.79 | -0.99 | -1.1 | -1.48 | -0.79 | -1.79 | -1.98 | -1.35 | -1.94 | -1.85 | 1.76 | -1.35 | 0.91 | -2.11 | -0.72 | -1.76 | 0.03 | -1.18 | -2.55 | -1.42 | -2.3 | -3.53 | -1.41 | 1.9 | -0.77 | -2.63 | - | -3.11 | -0.05 | 0.42 | -0.16 | -1.18 | -2.65 | 0.03 | -1.34 | -1.16 | 1.89 | -0.58 | 2.05 | -1.15 | -2.54 | 0.91 | -1.19 | -1.14 | 0.05 | - | - | - | -2.71 | -1.23 | 3.91 | -0.83 | -0.51 | -3.11 | -0.9 | -1.22 | -0.84 | 0.45 | 0.04 | 0.56 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.