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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.44 | 3.51 | 2.09 | -0.93 | -0.11 | -0.62 | 0.37 | -0.3 | -0.06 | -0.52 | 0.52 | -2.43 | -2.62 | 0.41 | -3.06 | 0.31 | -2.82 | 0.35 | -2.48 | 0.23 | -0.63 | -1.77 | -1.55 | -0.15 | -0.37 | -0.65 | -0.18 | -1.15 | -2.68 | -2.64 | -2.68 | 0.17 | 0.64 | -0.97 | -2.79 | -2.83 | -0.76 | -0.89 | 0.15 | -0.14 | -0.13 | -0.12 | -2.7 | -2.69 | 0.65 | -0.65 | -0.64 | -0.99 | -1.58 | -1.85 | 0.6 | 0.1 | -2.45 | 2.62 | -0.68 | -0.96 | -1.28 | -0.51 | -1.82 | 0.03 | -0.62 | -0.28 | -0.32 | |
| 0.46 | 4.08 | 2.53 | -2.18 | -1.88 | -1.49 | -0.3 | -1.73 | -0.9 | -1.27 | -0.39 | -1.33 | -1.28 | -2.07 | -0.96 | -0.25 | -2.33 | -0.37 | -1.9 | -1.63 | -1.4 | 0.81 | -0.12 | 1.06 | 1.0 | -0.14 | -1.41 | -2.58 | - | -1.76 | -1.1 | -0.76 | -0.17 | -1.39 | -3.05 | -1.64 | -0.77 | -3.77 | -0.97 | -1.96 | -0.52 | -2.96 | -1.81 | -1.73 | 0.74 | -2.58 | - | - | - | - | - | -4.52 | -2.28 | 3.47 | -1.37 | -1.05 | -1.62 | -2.04 | -2.03 | -0.65 | -1.62 | -1.14 | -1.13 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.