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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -2.5 | -1.87 | -2.15 | 0.03 | -0.02 | 0.31 | 1.56 | 0.86 | -0.5 | -0.35 | -0.52 | -1.71 | -1.25 | 0.79 | -1.35 | 0.79 | -1.0 | 1.15 | -1.11 | -0.73 | -0.51 | -2.03 | -1.16 | -1.94 | -1.08 | -0.18 | 1.33 | 1.15 | -1.76 | -1.42 | -0.61 | 1.0 | 0.23 | -0.16 | -1.79 | -1.58 | -2.08 | 1.58 | -1.23 | -0.43 | 0.49 | -0.66 | -1.56 | -0.31 | 0.94 | 1.34 | -1.16 | -0.51 | -3.05 | -3.49 | 1.98 | -3.22 | -1.57 | 0.76 | -1.72 | 2.73 | -1.2 | -2.01 | -1.01 | -0.03 | -0.6 | -1.8 | -0.94 | |
| 0.12 | 0.24 | 0.55 | -0.58 | -1.4 | -0.46 | -1.83 | -1.54 | -1.38 | -1.55 | -0.39 | -0.47 | 0.17 | 0.79 | -0.12 | 0.91 | 0.07 | 0.91 | -0.3 | -0.08 | -0.19 | 0.44 | 0.38 | -1.0 | 0.35 | -0.27 | 0.4 | -1.5 | -0.04 | 0.08 | 0.16 | 0.92 | 0.37 | -0.07 | -0.02 | 0.03 | -0.16 | 0.42 | 0.26 | 0.38 | 0.35 | 0.49 | -0.39 | 0.14 | 0.71 | -1.1 | -2.21 | -1.61 | -1.96 | -1.62 | 0.17 | -0.83 | -0.17 | 0.9 | 0.03 | -0.67 | -0.46 | 0.54 | -0.32 | 0.81 | 0.55 | 0.38 | 0.14 | |
| -0.43 | 0.47 | 0.94 | - | -1.44 | -1.68 | -0.88 | -0.82 | -0.21 | -0.11 | -2.27 | -0.53 | 0.41 | 1.63 | 0.57 | 1.42 | 1.29 | 0.86 | 1.32 | 0.59 | -0.78 | -1.52 | 0.66 | - | -0.19 | - | -2.96 | 0.63 | 0.06 | -0.08 | -0.68 | -1.35 | 0.23 | 0.24 | 1.11 | 0.06 | 0.92 | 0.8 | 0.25 | -1.75 | - | 0.57 | -0.92 | 0.89 | 1.12 | 0.96 | - | 1.23 | - | - | - | - | 0.05 | 0.27 | 0.26 | -1.42 | -0.13 | - | 0.18 | -0.17 | -1.73 | 0.27 | -1.76 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.