Heatmap: Cluster_39 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-8.9 -7.17 - -6.62 -5.37 -5.19 -6.3 -5.15 -5.38 -5.85 -6.33 - -5.82 -3.51 -6.39 -2.85 -6.77 -4.11 -5.15 -6.38 -7.41 - - - - - -3.9 - -7.87 -6.99 -5.76 -3.91 -4.83 -7.4 -5.58 -5.59 -4.08 -7.2 -5.4 -3.7 -6.41 -3.6 -6.56 -5.17 -4.07 - -6.96 - - -8.17 - - -6.37 5.95 -5.8 -7.07 - - - -6.4 -3.13 -7.38 -4.06
-0.67 -1.03 -1.02 -1.44 -3.57 -2.97 -5.64 -2.4 -5.25 -3.83 -3.58 -4.76 -4.4 -2.4 -3.8 0.24 -3.77 -0.53 -1.93 -1.13 -2.83 0.28 -1.66 -2.31 -4.81 -3.47 1.08 -0.84 -3.88 -4.42 -3.33 0.01 -0.82 -3.08 -3.39 -2.08 1.49 -2.15 -1.69 -0.8 -2.4 -1.07 -3.24 -4.37 -1.38 -0.48 -0.31 -1.4 -2.34 -4.58 -1.22 -4.36 -3.59 5.27 -2.06 -1.26 -2.36 -3.16 -3.14 -0.15 0.25 -1.28 -1.29
-4.32 -3.31 -4.06 -5.22 -3.77 -5.67 -1.86 -2.83 -4.06 -5.49 1.28 -4.2 -4.31 -2.38 -4.29 -2.02 -5.37 -2.77 -5.62 -7.0 -3.32 -0.82 -2.4 -4.25 -3.58 -4.4 -3.4 - -5.47 -5.26 -4.62 -1.62 -6.01 -3.42 -5.97 -5.53 -3.94 -6.8 -5.41 -4.68 -3.68 -5.0 -5.36 -4.39 -1.82 - -6.56 -6.6 - - -4.92 - -5.62 5.81 -3.99 -5.68 -4.65 -5.11 -3.36 -4.42 - -5.98 -
- -1.67 0.33 - -0.29 - -2.07 -1.61 -0.76 - 1.16 - - - - 1.67 - 1.56 - - - -2.31 -2.34 - -2.37 - 0.52 0.48 - - - 1.95 - - - - -3.13 - - - - - - - 0.1 - - - - - - - - 5.35 - -0.59 - - - -0.92 - - -0.91
-1.04 -2.0 -1.2 -2.31 -3.82 -3.08 -5.06 -2.78 -3.02 -2.8 -2.14 -2.2 -2.51 1.52 -3.0 1.79 -2.29 1.24 -2.49 -0.94 -3.3 -3.88 -4.35 -5.19 -4.48 -6.47 -0.12 -0.95 -3.42 -2.84 -2.26 2.16 0.15 -2.64 -2.86 -3.58 -0.33 -0.27 -0.63 -1.0 -1.71 0.47 -2.5 -2.95 1.48 -0.15 -1.41 -0.78 - - - - -2.7 4.73 -1.43 -1.85 -2.35 -0.76 -3.15 0.94 0.55 -0.09 -0.7
-5.31 -5.04 -4.92 -2.3 -1.95 -1.46 -1.44 -1.67 -2.6 -1.8 1.13 -0.07 -2.02 1.18 -2.43 1.45 -1.84 1.26 -2.51 -0.7 -0.15 -0.35 0.65 -0.93 -1.74 -0.4 1.83 -2.34 -2.58 -2.6 -2.19 1.66 -0.15 -1.1 -2.23 -2.23 -3.68 -1.56 -1.25 -0.54 -0.64 -0.24 -1.84 -2.26 1.49 -1.34 -1.26 -1.24 0.94 -9.22 -1.65 -6.41 -2.41 4.3 -1.8 -2.1 -0.22 -1.1 -0.55 -0.31 -0.33 -1.08 -0.79
- - - - - - - -10.87 -9.79 - - - -7.29 0.77 -5.95 1.16 -6.24 1.58 -6.89 - -1.28 -8.66 -9.4 - - - -1.94 - - - -6.63 2.69 - -2.93 - - -8.49 - - -1.4 -8.3 -4.12 - -6.92 1.1 -7.88 - - - - -7.2 - - 5.51 - - -4.66 - -5.76 -8.28 -1.77 - -3.22
- - - - - - -10.33 -9.89 -10.73 - -7.74 - -6.43 2.28 -6.22 2.54 -6.28 2.98 -6.7 -8.21 -0.08 -7.8 -7.57 -10.69 - -9.04 -1.48 - - - -6.26 3.48 - -1.59 - - -7.63 - - -0.98 -8.23 -3.19 - -6.72 2.46 - - -8.82 - - -7.15 - -11.04 4.64 - - -5.11 -7.27 -4.97 -8.23 -1.95 -8.2 -2.84
- - - - - - - - -8.24 - - - -6.8 1.98 -7.8 2.6 -7.76 2.88 -4.92 - -0.51 - -7.22 - - - -1.22 - - - -6.73 3.64 -4.81 -1.67 - - -8.0 - -6.79 -1.09 - -2.09 - -6.79 2.2 - -5.36 - -6.2 - -1.47 -7.35 - 4.68 - - - -5.81 -4.86 -5.21 -3.45 - -2.87
- -9.22 - - - -9.32 -9.88 -10.36 -9.91 -9.94 -6.66 - -6.31 1.83 -6.46 2.2 -7.42 2.54 -6.59 - -0.71 -8.82 -8.1 - - -8.31 -1.29 - - - -6.8 3.47 -7.48 -1.73 - - -7.87 - - -1.11 - -2.61 - -6.27 2.06 -7.09 - -8.07 -6.87 - -1.71 -9.02 - 4.97 - - -6.86 -8.48 -6.94 - -3.85 -6.86 -4.35
-6.5 -4.77 -5.04 - -5.31 -5.91 -6.33 -4.87 -6.44 - -2.52 - -6.03 2.55 -6.0 2.6 -5.97 2.99 -6.52 -3.11 0.92 -6.95 -6.86 - -8.05 -6.99 0.4 -4.62 - - -5.94 3.19 -4.02 0.63 - - -6.46 - -6.59 0.23 - -0.78 - - 2.52 -6.21 -3.83 -5.18 - -6.37 -3.7 - - 4.28 - - -2.47 -6.73 -3.33 - -0.19 -6.57 -1.62
-8.14 -9.46 -8.95 -10.72 -9.03 -7.89 -8.13 -8.13 -7.42 -5.89 -4.98 -7.48 -5.76 2.31 -6.14 2.65 -5.92 2.79 -5.48 -3.1 0.76 -0.98 -6.05 -6.96 -0.99 -6.74 -0.85 -5.72 -6.16 -5.58 -5.66 3.45 -3.26 0.44 -4.4 -4.38 -6.45 -6.0 -3.9 0.32 -5.43 -0.87 -6.56 -4.71 2.39 -5.66 -6.21 -6.85 -10.91 -10.28 -9.1 -8.36 -5.08 4.33 -4.91 -6.53 -3.65 -4.98 -3.25 -3.18 -0.67 -4.88 -1.68
-8.83 -6.79 -6.64 - -8.03 -8.29 -7.09 -7.91 -7.63 -6.71 -4.73 - -6.26 2.22 -6.16 2.53 -6.6 2.88 -6.46 -4.28 0.21 -5.23 -6.57 -10.81 -5.72 -7.76 -0.48 -4.78 -9.88 -7.93 -5.47 3.51 -4.1 0.03 -7.15 -7.84 -6.5 -9.14 -5.64 -0.08 -5.77 -1.15 -9.5 -6.36 2.46 -6.38 -5.0 -6.93 -9.75 -10.12 -6.45 - -7.32 4.5 -6.74 -7.43 -4.56 -7.08 -4.54 -5.02 -0.95 -6.15 -2.86
- - - - - - - -6.39 - - -4.25 - -6.34 -1.7 -5.3 -1.67 -6.28 -1.44 -6.23 -5.28 - - -6.44 -3.78 -6.78 -3.01 -4.05 - - - -6.27 -1.22 - - - - -7.53 - - - - -5.31 -6.48 -6.32 -1.04 - - - - - - - - 5.92 - - - - - - - - -
- - - -3.17 -5.89 - -5.1 -5.27 - - -4.46 - - -1.85 -4.93 - -4.9 -1.87 -4.86 - - - -5.38 -4.41 - -3.05 -5.1 - - - - -1.56 -2.96 - - - - - - - - - - -4.85 -1.94 - - - - - - - - 5.93 - - -3.9 - - - - - -
- - - - - - - -1.66 - - - - - 1.83 - 3.12 - 3.43 - - - - - - - - - - - - - 2.75 - - - - - - - - - - - - -0.02 - - - - - - - - 5.0 - - - - - - - - -
- - - -0.45 - - - - - - -0.75 - - 1.46 - 1.41 - 2.62 - - - -3.59 - - - -1.29 0.2 - - - - 2.52 - - - - - - - -1.23 - -2.23 - - 1.77 - - - - - - - - 5.24 - -1.91 - - - - -1.21 - -2.24
- - -5.08 -2.53 -6.39 -5.32 - -5.37 - -5.65 0.03 - - 2.31 - 2.03 -5.28 2.4 -4.23 -3.29 -0.87 -4.69 -2.47 -3.18 - -2.25 1.28 - -4.85 - -5.26 3.03 -1.33 -1.51 - - - - - -1.99 - -4.32 - - 2.48 - -2.88 - - - - - -5.08 4.77 - - -2.28 - -1.57 - -1.29 - -0.97
-3.58 -3.0 -3.31 -2.77 -0.85 -0.8 -0.31 -1.59 -1.77 -1.62 -0.36 -3.91 -4.23 0.99 -5.54 0.42 -4.19 0.43 -2.67 -3.94 -2.98 -6.9 -6.67 -3.82 -4.18 -2.64 -1.78 -4.17 -4.04 -3.51 -3.17 1.14 -1.75 -1.75 -3.86 -5.04 -2.75 -3.73 -4.55 -2.55 -0.97 -2.96 -3.72 -5.45 1.19 -5.17 -5.12 -5.14 - - - - -3.74 5.51 - -4.22 -3.93 -5.57 -5.62 -3.56 -2.35 - -2.53
-0.89 2.96 1.31 -4.13 -5.72 -5.0 -4.84 -5.8 -4.53 -5.09 -6.43 -7.28 -6.19 0.51 -6.92 0.16 -6.0 0.73 -6.84 -4.09 -3.77 -4.31 -4.46 -1.59 -1.45 -2.45 -1.95 -7.11 -8.0 -7.09 -6.84 0.36 -3.19 -2.55 -8.09 -6.96 -4.77 -5.95 -5.5 -3.91 -1.55 -4.11 -9.67 -6.27 1.28 -5.79 -4.6 -7.1 -4.05 -4.28 1.54 -1.05 -6.96 5.23 -7.49 -5.0 -7.47 -6.24 -6.57 -4.92 -2.19 -6.16 -1.69
- -2.24 - - - - - - - -2.79 -1.98 - - -1.15 -2.45 2.65 - 1.63 - - -0.47 -2.81 - - - - -2.0 - - - - 3.46 - - - - - - - - - -1.47 - - 2.96 - - - - - - - - 4.97 - -1.13 - - - - -1.43 - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.76 - - - - - - - - - - - - - - - - - - - - - 5.81 - - - - - - - - -
- - - - - - - - - -2.96 - - - 1.5 - 0.58 - 0.09 - - - - - - - - -1.96 - - - - 2.76 - - - - - - - - - - - - 2.32 - - - - - - - - 5.51 - - - - - - - - -
-5.54 -6.8 -5.23 -2.46 -6.01 -2.08 -3.11 -3.63 -6.17 -5.72 -3.24 -6.41 -6.46 2.37 -5.04 2.64 -7.0 2.89 -4.66 -1.33 -0.05 -3.22 -2.78 -5.46 -4.02 -4.64 0.98 -3.49 -7.58 -5.67 -4.4 3.14 -1.74 0.26 -5.67 -5.3 -4.73 -3.65 -2.09 1.42 -3.48 1.36 -6.22 -5.43 2.65 -2.75 -4.02 -2.47 - - -6.97 -7.6 -6.01 3.56 -2.87 -2.26 -1.41 -2.43 -2.02 -1.12 0.99 -1.7 -0.08
- - - - -9.09 - -8.29 - - - - - -6.15 -5.52 -5.81 -6.89 -5.1 -6.86 -5.75 - - -6.91 -8.26 -8.54 -7.6 - -7.73 -6.76 -7.61 -6.73 -5.75 -5.43 -6.15 - -6.16 -5.67 -3.49 - - -7.14 - -7.15 -6.72 -5.1 -6.72 - - - -7.54 - -6.06 - -6.6 5.97 - -6.81 - - - - -7.11 - -5.52
-5.53 - -6.39 0.62 -3.61 -1.96 -2.27 -2.84 -4.76 -2.48 0.42 0.2 0.37 0.96 0.31 0.7 0.37 0.74 0.83 0.1 -2.48 0.91 1.14 -1.54 0.01 -1.1 -1.34 -0.11 0.34 0.7 0.5 0.43 0.01 -3.63 0.61 0.9 0.45 -1.92 -1.3 -2.3 -2.46 -1.92 0.54 0.55 0.54 0.09 0.06 -0.31 - - -4.54 - 0.89 3.83 -1.61 -1.97 -3.28 -2.89 -2.68 -1.93 -3.6 -1.08 -0.57
-4.55 -1.51 -2.14 -3.45 -3.45 -1.13 -4.05 -2.39 -3.16 -1.89 -0.97 -5.6 -2.08 0.6 -2.84 1.09 -3.11 0.73 -2.72 -0.04 -1.4 0.06 -2.36 -4.1 -4.51 -5.05 -0.14 -0.61 -3.42 -2.75 -2.65 -0.0 -0.72 -1.99 -4.26 -3.02 -2.33 -0.84 0.73 -0.68 -1.73 -0.54 -2.7 -4.03 0.34 0.01 -1.1 -0.16 - - - - -3.37 5.09 0.49 -0.86 -1.56 -1.68 -2.05 -0.75 -0.57 0.07 -0.44
- - - - - - - - - - -1.08 - - 0.75 - -1.3 - 0.28 0.08 - - - - - - - -1.04 - - - - 0.43 - - - - 1.75 - - -0.56 - 0.43 -1.74 - 0.43 - - - - - - - - 5.56 - - - - - -0.56 0.46 - -
-5.42 -4.67 -3.67 - -4.95 -3.78 - -5.18 -5.36 -5.25 -4.43 - -4.94 2.66 - 2.34 -4.88 2.84 -3.83 -0.58 -1.35 -4.27 -5.35 -3.35 -5.38 -5.3 -0.64 -2.53 -4.46 -4.45 - 2.61 -0.12 -0.76 - -4.34 -2.66 - -0.01 1.13 -1.35 1.03 - - 2.6 -1.96 -1.48 -0.35 -4.33 - - - - 3.79 -1.91 -1.01 -2.9 -1.15 - -0.75 1.11 -1.09 1.28
0.18 0.02 -0.37 -3.64 -5.87 -4.85 - -7.66 - -4.52 -5.93 -4.78 -2.03 0.29 -2.41 0.29 -2.12 -3.31 -2.76 -3.39 -3.43 -3.46 -3.21 - - -6.85 -3.13 -4.03 -2.47 -2.19 -2.11 1.08 -4.43 - -2.27 -2.73 -0.09 -3.19 -4.42 -5.41 -5.44 -2.84 -3.12 -2.78 1.4 -2.71 - -3.43 - - - - -2.29 5.55 -1.82 -2.09 -2.58 -4.49 -1.78 -3.84 -3.39 -3.39 -
-3.69 - -1.37 - -2.2 - -3.61 -1.09 -1.63 -3.88 0.46 -2.56 -2.22 - - 1.23 - - -0.56 1.15 -0.63 -1.98 -1.93 -2.6 - - 0.38 -1.82 - -1.26 -3.11 -0.21 -1.21 0.13 -1.86 - -0.14 - -2.19 1.27 -2.21 1.26 -3.37 -3.19 -1.78 -0.22 0.24 - - - - - -1.39 5.08 -0.6 - -2.15 -2.21 - -2.19 1.53 -2.17 -0.16
- - - -2.51 -3.29 - -3.45 -3.26 - -4.63 -2.81 -2.07 -4.29 -0.1 - 0.77 -4.24 -1.22 -2.62 - -2.32 -4.7 -1.49 - -4.58 -4.67 0.11 -2.9 - -2.82 -1.91 0.27 - - - -3.87 -2.7 - - -2.29 -1.3 0.16 - -3.24 0.38 -2.92 -2.85 -2.89 - - - - -3.5 5.62 -1.7 -0.96 - - -2.35 -2.3 -0.46 -2.27 -3.3
-0.45 1.27 1.5 - - -1.55 -0.28 -2.61 -2.05 - -1.06 - - 3.21 - -0.28 -1.51 0.31 - - - - -1.97 - - - 0.67 - - - - - - - - - 0.09 - - 0.46 - 0.46 - - 0.47 -0.16 - - - - - - - 5.03 - - - -0.68 0.4 - -0.52 - -
- -1.03 - - - - - -3.59 - -2.95 - - - 2.35 - -0.43 - 0.81 - - - - -1.39 - - - -1.79 - - - - - -0.28 - - - -3.41 - - - -1.28 - - -2.16 -1.83 -0.89 - - - - - - - 5.66 - - - -1.28 - - - -0.24 -
-0.22 2.88 1.83 - - - - -5.99 -4.27 -6.26 - - -4.81 1.52 - 1.18 -5.73 2.15 - - - -5.19 -6.21 -3.04 -4.66 -2.48 -0.66 - - - - 1.98 - -3.79 - - -1.06 -2.59 -4.79 - -2.79 - - -5.78 2.57 -4.38 - - - - -4.7 - -6.55 4.87 - -3.46 - -3.3 - - - -4.76 -4.79
-1.49 0.02 -0.94 0.07 -2.99 -3.42 -3.63 -2.79 -2.1 -3.17 -3.47 -4.0 -1.92 -1.66 -1.75 -1.49 -2.45 -1.27 -1.84 -0.93 -2.4 -2.88 -2.1 -2.19 -3.26 -2.41 -0.39 -0.44 -2.38 -2.38 -1.64 -1.0 -0.72 -1.71 -2.53 -1.99 2.02 -0.97 -0.79 -0.02 -1.97 0.31 -1.8 -1.71 -0.89 -0.44 -0.93 -0.23 -6.36 -2.48 -2.18 -1.99 -1.83 5.18 -2.14 -0.87 -4.93 -1.5 -4.44 -1.0 -0.2 -1.35 -1.23
-1.41 0.8 -0.43 -1.47 -3.33 - -3.67 -2.66 -3.69 -3.58 -2.77 -0.62 -1.25 -0.13 -0.67 -1.99 -2.2 0.49 0.82 - - - - - - - -0.94 -1.87 -0.77 0.35 -0.6 1.05 -1.26 - -0.06 -0.19 1.9 - - -2.24 - - 0.04 -0.63 1.69 -0.85 -0.82 -0.84 - - -2.17 - 0.55 4.96 -2.24 -0.33 -2.21 - - - -0.64 - -
-4.05 -3.33 -4.33 -1.78 -5.58 -1.88 -4.98 -2.45 -4.0 -2.13 - -1.92 -2.24 0.79 -3.54 1.85 -2.51 1.5 -1.68 -2.55 - -1.49 -3.4 -5.02 -5.02 -4.99 -1.06 - -4.03 -2.15 -1.92 1.65 -1.57 - -2.23 -2.05 -0.99 -3.3 -2.56 -1.23 -1.57 0.02 -4.72 -2.9 2.09 - -3.13 -2.15 - - - - - 5.24 -3.55 -3.23 -2.53 -2.57 -3.63 - -0.36 - -1.22
-2.37 -1.77 -2.54 -1.0 -2.78 -1.75 -3.71 -2.54 -2.74 -3.0 -1.93 -2.36 -2.78 0.89 -2.26 0.8 -2.73 0.88 - -0.32 -3.03 -1.58 -2.07 -4.45 -1.51 -2.29 -0.83 -2.2 -2.8 -2.86 -2.37 0.28 -0.14 -2.01 -4.17 -3.12 -1.87 -1.18 -0.59 -0.49 -1.27 0.11 -2.29 -2.18 0.42 -0.74 -3.14 -2.6 - - - - -2.04 5.28 -1.12 -2.68 -2.98 -1.86 -3.64 -1.59 -0.17 -1.98 -0.57
- -4.24 -5.24 -2.11 -5.45 - - -5.92 - -5.81 -2.99 - - -1.46 -5.48 -0.52 - -0.5 -5.39 -2.15 -1.49 -5.88 -5.9 - - -5.85 -1.03 -4.08 -5.01 -5.12 - -0.9 -1.48 -2.15 - - -5.68 -4.27 -3.47 0.34 -4.47 -0.23 -5.64 -5.37 -0.96 -4.07 -3.03 - - - - - - 5.75 - - -2.12 -4.49 -2.53 -2.89 -0.99 -4.45 -1.46
- - - 2.27 -3.91 - - -2.47 -1.44 -3.3 -2.48 - - - - - - - - -1.96 - - - -2.4 -1.38 -3.35 -1.78 -1.57 - -2.5 - -1.58 - - -2.64 - -2.13 -0.71 - - - - -3.14 - -2.54 0.01 -0.54 0.02 - - - - - 5.64 - -1.63 - -1.98 - - -1.94 - -0.93
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.