Heatmap: Cluster_4 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-5.96 -3.65 -2.64 -1.09 0.2 -1.3 -1.49 -2.16 0.19 -3.01 5.46 -4.82 -2.88 -3.15 -0.93 -3.61 -4.42 -5.2 -2.07 -4.42 -2.89 -4.25 -1.15 -3.29 0.42 -1.34 2.27 -1.75 -3.96 -3.4 -5.38 -1.89 -3.47 -4.46 -1.88 -3.4 -3.08 - -2.14 -2.45 -1.47 -2.87 -4.04 -5.46 -3.46 -3.06 -4.03 - -4.87 - -0.92 -5.02 -4.25 -1.63 -1.86 -4.13 -1.85 -3.48 -1.06 0.06 - -1.27 -3.46
-5.36 - - -0.5 0.15 -2.9 -2.08 -0.88 0.49 -3.38 5.61 - - - -1.28 - -2.5 - - -2.83 -3.88 - - - - - 1.79 - -3.37 -4.4 -2.23 -4.48 -1.88 - - - -3.5 - -2.29 - -1.07 -2.29 - -4.77 - -1.9 - -1.14 - - 0.12 - -5.67 -3.68 - -3.53 -2.85 -1.61 -2.34 -0.7 - -1.04 -3.83
0.46 1.09 1.24 0.55 -0.24 -1.02 -0.35 -0.78 -0.84 -1.19 2.36 -1.14 -0.63 -0.41 -0.69 -0.27 -0.54 -0.44 -0.4 -1.61 0.18 0.32 0.73 -0.33 0.4 -0.78 0.55 0.65 0.39 0.45 -0.43 -0.58 -1.32 0.2 0.42 0.55 0.24 -0.21 -0.66 -0.35 -0.66 -0.56 -0.45 -0.55 -0.65 -0.15 0.9 -0.0 -1.04 -7.72 -3.85 -7.62 -0.36 -2.18 -0.85 1.5 0.95 -1.6 0.51 -0.85 0.29 -1.06 0.41
-7.31 -6.07 -6.81 -6.26 -1.16 -2.51 -0.83 -1.49 -0.91 -3.33 4.58 - -9.65 1.84 -3.32 1.99 -7.26 2.09 -5.4 -2.48 0.54 -4.28 -2.6 -4.94 -1.23 -3.71 0.99 -5.44 -6.51 -6.4 -6.57 2.55 -3.0 0.92 -7.13 -6.56 -6.82 -8.37 -4.54 -0.19 -1.69 -0.72 -9.8 -7.98 2.05 - -6.61 -7.23 - - - - -8.82 0.24 -4.71 -4.84 0.03 -3.22 1.57 -2.13 -0.42 -3.4 -2.29
-5.71 -5.08 -4.98 -7.44 -0.64 -2.07 -0.66 -0.97 -0.47 -2.69 3.74 - -6.32 2.34 -4.02 2.44 -8.59 2.68 -5.46 -2.77 1.05 -3.81 -2.13 -3.55 -2.27 -3.24 0.95 -6.25 -6.02 -5.93 -5.41 2.99 -3.1 1.48 -6.15 -5.46 -6.41 -8.02 -4.32 0.33 -1.5 -0.68 -7.81 -6.83 2.49 - -7.78 - - - - - -8.67 -0.02 -4.82 -5.89 -0.0 -3.55 1.17 -2.73 0.09 -3.77 -1.8
- -7.58 - -6.01 -3.86 -4.98 -2.65 -2.81 -3.18 -4.41 0.76 - -5.21 2.26 -3.04 2.64 -5.43 2.93 -4.27 -2.53 1.77 -6.58 -2.24 -4.53 -3.61 -3.62 0.64 - -7.33 -5.35 -4.4 3.65 -2.22 2.3 -4.13 -4.37 -6.19 - -5.22 1.76 -1.94 0.43 -7.96 -6.74 2.66 - -3.54 - -4.03 - -4.71 - -8.6 0.46 -6.78 - -0.26 -3.72 0.37 -4.48 1.38 -5.19 -0.59
-1.64 -0.61 -0.79 -1.47 -0.86 -1.34 -0.2 -1.32 -0.76 -1.63 2.53 -3.63 -3.34 2.85 -2.87 2.33 -3.52 2.69 -3.45 -1.06 -0.15 -1.56 -1.36 -0.08 -1.23 -1.9 -0.23 -1.76 -2.66 -2.86 -3.66 2.3 -0.25 0.52 -2.77 -2.67 -1.99 -2.26 -1.93 0.77 -1.98 1.42 -3.42 -3.33 2.79 -2.65 -1.31 -3.27 -2.33 -6.31 -3.1 -5.46 -3.19 -0.73 -2.44 -1.66 0.18 -2.68 0.05 -2.06 0.43 -1.99 0.43
-1.27 -2.2 -2.39 0.49 0.09 0.06 -0.23 -0.59 -0.4 -0.44 -0.18 0.32 -0.51 0.19 -0.53 0.17 0.12 -0.02 -0.25 0.52 0.07 -1.25 -1.04 -1.69 -0.87 -1.29 0.06 0.22 -0.32 -0.25 -0.02 0.25 0.11 0.15 -0.33 -0.43 -0.84 2.23 0.31 0.13 0.3 -0.17 0.13 -0.27 0.53 0.18 0.35 0.32 -1.74 - -2.45 - -0.22 0.2 1.03 1.1 -0.61 1.12 -0.49 0.73 -1.06 1.44 -0.41
-4.59 -2.88 -3.88 0.26 -1.38 -2.49 -0.45 -1.14 -0.77 -1.76 4.28 -1.15 -0.8 1.19 -1.79 0.84 -0.61 -0.67 -0.59 -0.49 -1.13 -1.18 0.79 -0.56 -0.6 -0.7 0.25 0.09 -1.6 -1.13 -1.45 0.19 1.05 0.21 -3.61 -0.97 -3.74 - -0.79 -1.52 0.34 0.7 -1.95 -2.46 -0.88 -0.14 0.5 0.88 - -3.88 0.67 -1.08 -1.3 0.98 -2.1 0.02 -1.07 -3.25 -0.36 0.59 -2.09 -1.09 -3.11
1.2 0.36 0.47 0.28 0.13 -0.13 0.06 -0.14 0.21 -0.28 1.7 -0.15 0.55 0.32 0.65 0.2 0.43 0.4 0.81 -0.57 -0.39 - - - - - -0.93 0.04 0.97 1.23 0.8 0.91 -0.36 -0.51 1.19 1.24 0.97 -0.35 -0.76 -1.3 -0.03 -1.89 -0.34 0.44 0.74 -0.25 -0.8 -0.19 -4.68 -3.28 -1.99 -2.9 -0.35 0.6 -1.72 0.69 0.34 -1.53 -0.48 -0.87 -0.95 -2.25 -1.33
-1.93 -1.36 -1.07 -0.8 0.48 0.33 0.56 0.41 -0.16 -0.2 3.49 -1.66 -2.31 0.46 -2.25 0.39 -2.11 0.18 -2.07 -0.44 0.22 -1.61 -0.16 -1.49 -0.52 -0.45 0.56 0.88 -1.85 -1.77 -2.06 0.02 -0.39 -0.01 -1.75 -1.63 -1.93 0.28 0.17 0.5 -0.34 -0.09 -1.71 -2.04 0.36 0.75 1.47 0.81 -2.44 -4.78 -2.42 -3.79 -1.88 0.09 -0.01 1.15 0.84 -1.21 0.24 -0.7 -0.19 -0.4 -0.08
0.0 -0.31 -0.27 0.41 0.56 0.27 0.51 0.35 0.45 0.4 -0.84 0.03 -0.04 -0.13 0.05 -0.41 0.09 -0.27 -0.0 -0.02 0.45 -0.45 0.1 0.11 -0.21 0.48 0.29 -0.34 0.37 0.42 0.03 -0.16 -0.41 0.15 0.31 0.33 0.16 -0.3 -0.19 0.3 0.3 0.38 0.23 -0.03 -0.05 -0.42 0.17 -0.27 -0.48 -2.11 -1.33 -1.6 0.2 -0.8 -0.19 0.15 0.11 -0.47 0.07 -0.22 0.23 -0.36 -0.08
-1.96 -3.24 -1.95 1.84 -0.07 -1.74 1.17 -0.67 -1.87 -0.87 4.09 -0.52 -0.28 -3.52 -0.81 -2.83 0.17 -3.28 -1.07 -2.76 -2.13 0.67 1.14 2.34 0.99 1.18 -1.79 -3.36 0.44 0.49 -0.99 -3.16 -2.71 -3.33 0.61 0.61 -1.98 -3.23 -3.45 -3.67 -4.6 -3.26 0.72 -0.36 -3.08 -3.11 -2.73 -2.55 -0.16 -1.37 1.09 -1.06 1.19 -2.6 -2.4 -2.87 -0.38 -2.72 -2.43 -1.45 -4.3 -1.8 -2.72
1.48 1.2 0.62 1.16 -0.57 -0.63 -0.77 -1.87 - -1.01 5.11 - - - - - - - - 0.42 1.35 - - - - - 1.95 - - - - 1.78 - 0.38 - - -0.16 - - - - - - - - - - - - - - - - 1.15 - - - 0.36 - - - - -
-1.71 -0.17 -0.33 -1.83 -0.51 -1.06 0.92 -0.34 0.13 -0.52 4.83 -3.39 -4.04 -0.78 -2.61 -0.55 -3.57 -0.34 -4.52 -0.2 0.86 -0.94 0.51 -0.95 -0.14 -1.37 1.81 -0.41 -3.5 -5.14 -5.53 -0.26 0.18 -0.03 -4.12 -2.86 -1.38 -1.39 -1.61 -1.61 -1.81 -2.29 -3.45 -3.93 -0.38 -3.23 -2.6 -1.04 - - - -3.58 -2.7 0.02 -2.6 0.18 0.32 -2.12 0.14 -1.03 -1.0 -2.59 -2.02
-2.98 -1.26 -2.84 -1.3 -4.09 -1.43 -2.91 -1.74 -1.73 -1.34 4.09 -2.44 -2.52 1.03 - 1.31 -4.03 -1.49 -2.03 -0.05 -2.11 - - - - - 1.08 -2.69 -3.55 - - 1.32 -1.09 0.09 - - -1.78 -0.29 -1.5 0.38 -0.76 1.24 - -4.08 1.73 -0.11 2.12 1.13 - - -1.41 - -3.85 2.16 0.1 0.42 -3.04 -1.13 -0.14 -1.08 1.03 0.11 0.26
-3.68 -3.21 -3.85 -4.11 -1.26 -0.81 -1.91 -1.83 -3.34 -1.17 4.12 -1.26 -4.58 -0.51 -3.3 -0.45 -4.27 -0.12 -3.01 0.78 0.56 -1.6 0.25 -2.56 -2.43 -2.22 -0.09 1.46 -3.22 -3.03 -3.37 0.2 -1.21 1.49 -4.52 -2.82 -2.32 2.26 -1.25 -1.25 -1.58 -0.61 -2.06 -2.86 -0.22 1.0 1.52 0.51 - - 1.06 - -3.43 0.31 1.09 0.05 0.77 -0.86 -0.75 -0.65 -0.87 -0.7 -0.46
-1.06 -0.84 -0.44 0.62 -0.43 -0.54 0.16 -0.31 -0.97 -0.48 3.24 -1.39 -0.79 0.26 -0.75 -0.02 -1.21 -0.26 -0.22 -0.01 -0.89 0.15 0.94 -0.13 -0.74 -0.13 0.21 0.18 -0.28 -0.36 -0.77 -0.47 0.35 -1.21 -0.47 -0.16 -0.52 -0.31 -0.46 -0.0 -0.68 1.05 -0.26 -0.78 0.03 0.23 -0.59 -0.23 -1.92 -5.35 -1.62 -1.63 -0.55 0.59 -0.53 -0.25 0.6 -0.41 0.24 -0.03 0.91 0.11 0.25
0.28 0.49 0.4 1.03 0.81 0.44 0.53 0.54 0.82 0.5 -0.29 -0.11 -0.58 -0.5 -0.76 -0.28 -0.59 -0.0 -0.54 -0.1 0.05 0.36 0.7 0.21 0.69 0.4 0.58 -0.3 -0.08 -0.18 -0.66 -0.42 -0.52 0.34 -0.14 -0.12 0.21 -1.1 -0.09 0.05 -0.04 -0.03 -0.02 -0.74 -0.23 -0.64 0.0 -0.54 -0.28 -1.34 -1.53 -1.85 0.0 0.2 -0.28 0.01 0.02 -0.47 0.05 -0.44 0.28 -0.19 -0.12
-2.7 -2.31 -2.57 0.01 -0.51 -1.08 -1.21 -1.12 -0.77 -0.88 2.9 -0.51 -0.91 -0.09 -0.98 0.23 -0.79 0.11 -0.66 0.24 0.43 -0.32 0.58 -0.62 -0.65 -0.22 0.85 -0.68 -1.09 -0.96 -0.86 0.55 0.57 0.62 -1.02 -0.62 -1.45 -0.4 0.17 1.13 0.33 1.6 -0.79 -0.9 0.58 -0.61 -0.27 -0.69 -1.56 -1.82 1.12 0.16 -0.88 0.59 -0.45 -0.82 -0.04 -0.1 0.0 -0.1 0.55 -0.04 0.18
-0.39 0.5 0.49 0.18 0.32 -0.84 -1.61 -1.07 0.63 -1.1 2.62 -0.4 -1.53 -0.42 -1.64 -0.61 -1.42 -0.21 -1.77 -0.18 0.46 0.48 1.82 1.69 0.83 0.59 0.26 -0.03 -0.63 -0.52 -1.54 -0.32 -0.35 0.89 -0.83 -0.75 -0.83 -0.13 -0.35 -0.73 -0.79 -0.46 -0.87 -1.55 -0.18 0.22 0.84 0.19 -3.77 -1.9 0.07 -0.48 -0.6 -0.7 -0.76 -0.3 0.79 -0.35 0.34 -0.37 -1.11 -0.4 -1.32
-1.3 -1.11 -0.46 -0.4 -0.12 -2.42 -1.73 -1.51 0.58 -2.13 -0.38 -4.87 -3.93 2.5 -2.34 2.42 -2.47 2.76 -2.12 -4.5 1.38 -3.89 -2.59 -0.74 -3.08 -1.82 1.6 -3.12 -3.98 -2.3 -2.0 3.2 -1.94 0.53 -2.51 -3.44 -1.04 -3.31 -1.71 0.3 -0.13 0.54 -2.09 -3.89 2.61 -4.11 -2.08 -4.1 -2.92 - 0.96 -3.48 -2.98 -0.25 -1.18 -1.38 -0.89 -1.98 -0.76 -1.71 0.16 -1.03 -0.59
-3.17 -0.55 -0.94 0.24 -0.31 0.62 1.66 0.75 -0.18 -0.21 2.83 -2.05 -2.16 -0.4 -2.32 -0.82 -2.47 -1.33 -2.59 0.22 -1.35 1.62 1.25 0.92 1.59 0.17 0.32 0.01 -2.65 -3.03 -2.77 -0.79 0.23 -0.92 -2.96 -2.68 -2.11 -2.77 0.01 0.46 -0.75 0.6 -1.76 -2.48 -1.07 0.6 -0.05 0.5 1.35 -1.27 1.51 -3.56 -1.86 -0.81 -0.75 -0.41 -1.93 -0.36 -2.26 -1.03 0.11 0.29 0.69
0.01 0.53 0.81 0.18 -0.79 -1.58 -2.96 -1.37 -0.64 -1.72 3.1 -3.25 -3.78 -0.2 -2.9 -0.0 -3.09 -0.19 -3.04 0.1 0.43 -0.16 0.57 -0.83 0.13 -0.84 1.21 0.74 -2.64 -2.43 -3.29 -0.29 0.1 0.1 -2.28 -2.1 -0.52 -0.21 0.44 -0.39 0.43 -0.23 -3.19 -3.55 -0.22 0.76 2.46 1.29 -1.23 -3.79 -0.55 -2.21 -2.68 -2.73 0.11 0.91 0.43 -0.34 0.43 0.21 -0.44 0.23 -0.37
-1.69 -6.52 -7.51 1.17 -0.78 -1.63 1.38 -1.0 -1.96 -0.4 3.06 -0.84 -0.84 - -0.5 -7.49 -0.14 - -1.01 -6.7 -2.06 1.9 3.16 2.61 0.04 2.71 -2.67 -6.36 -0.76 -0.56 -0.73 -4.54 - -4.42 0.18 0.33 -0.89 -2.8 -4.74 -4.74 -3.59 -4.74 1.59 -1.14 -6.31 - - - -3.45 - - - -0.18 -4.28 -1.11 -3.6 1.97 -0.93 0.3 -1.99 -3.13 -0.88 -2.56
-0.33 -1.57 -1.54 0.56 -0.18 -1.55 0.41 -0.78 -1.03 -0.38 2.14 -0.25 0.74 -1.67 0.86 -2.07 0.8 -1.1 0.74 -2.99 -0.42 1.74 2.23 0.99 0.9 1.42 -1.24 -2.94 0.52 0.98 0.61 -1.47 -1.88 -1.75 0.75 0.99 0.12 -2.1 -2.52 -3.0 -1.43 -2.52 1.63 0.61 -2.32 -2.36 -4.3 -4.34 -0.52 -6.1 -6.25 - 0.98 -4.32 -0.82 -2.09 0.87 -0.26 -0.18 -0.03 -1.6 -0.33 -1.02
-0.44 -5.45 -4.17 2.22 0.06 -1.25 1.59 -0.03 -1.48 0.04 2.73 -1.23 -0.86 -1.55 -0.08 -1.74 0.03 -1.29 -0.23 -5.47 -1.81 1.33 2.87 1.51 0.55 1.64 -0.35 - -0.56 -0.68 -0.46 -1.1 -5.51 -3.25 0.29 0.26 0.28 -4.46 -4.49 -3.17 -2.33 -1.8 2.24 -1.05 -1.04 -7.12 - - -2.38 - - - 0.55 -0.93 -1.6 -4.58 1.33 -0.06 -0.77 -0.96 -2.04 -0.72 -2.23
-1.98 -6.9 -5.36 2.29 0.51 -1.15 2.35 0.45 -1.47 0.14 2.4 -0.65 -0.69 -1.72 -0.13 -1.08 0.01 -1.99 -0.01 -6.31 -1.9 0.45 2.09 2.1 0.76 2.01 -0.26 -5.58 -0.45 -0.44 -0.49 -0.91 -5.82 -2.42 0.48 0.37 -0.28 -4.2 -4.74 -1.64 -3.97 -1.83 2.46 -0.92 -0.98 -7.15 -7.69 -6.73 -4.49 -9.91 -7.47 - 0.66 -0.84 -2.49 -3.22 1.49 -1.75 -0.89 -2.98 -1.55 -2.11 -2.48
-0.23 -0.13 -0.02 -0.54 0.17 0.34 -0.06 0.21 0.09 0.04 -0.07 -0.53 -0.56 0.71 -1.0 0.8 -0.8 0.46 -0.68 -0.37 0.17 0.42 0.95 -0.28 0.3 0.19 0.92 -0.12 -0.24 -0.24 -0.76 0.65 -0.92 0.89 -0.49 -0.29 -0.45 0.34 0.09 0.46 -0.72 0.19 -0.63 -0.98 0.39 -0.33 0.79 0.01 -1.76 -1.91 -1.08 -1.08 -0.61 1.07 0.05 0.53 -0.01 -0.85 -0.19 -0.55 0.56 -0.39 -0.04
0.78 1.54 1.61 -3.25 2.22 0.57 1.97 1.44 0.79 1.59 2.66 -0.39 -0.42 -0.87 0.22 -0.87 -0.62 -1.13 -0.64 -1.7 0.05 -0.68 -0.39 -1.11 0.48 -1.02 -1.22 -1.22 -0.54 -0.7 -1.0 -1.27 -1.87 -1.67 -0.68 -0.63 0.29 -1.67 -1.76 -2.04 -1.07 -2.33 -0.1 -0.83 -1.05 -0.77 -0.87 -0.56 -1.4 -8.13 -2.09 -7.33 -0.42 -1.86 -1.85 -0.13 1.0 -0.71 1.29 -1.14 -2.0 -1.73 -1.18
-1.29 0.16 -0.29 -0.22 -0.12 0.19 0.84 0.04 -0.31 -1.22 4.83 -2.86 -3.9 -1.09 -2.65 -0.57 -3.18 -0.79 -3.36 -0.92 -0.87 -0.62 -0.12 1.84 1.16 -0.84 0.08 -0.9 -2.9 -2.53 -3.92 -0.53 0.28 -0.53 -2.88 -2.67 -2.22 -2.94 -1.09 -1.19 -0.5 -0.78 -2.96 -3.19 -0.69 -1.23 -0.53 -0.76 -4.98 -8.52 -1.34 -5.3 -2.69 -1.46 -2.73 -2.89 -0.98 -2.49 -0.26 -1.56 -1.79 -1.7 -2.03
-1.85 -0.24 -0.58 -1.2 -0.82 -1.49 -0.65 -0.97 -0.74 -2.27 5.05 -4.95 -4.22 -1.99 -3.38 -1.87 -4.28 -1.63 -4.76 -2.4 -1.03 0.66 1.94 1.02 1.48 -1.39 0.18 -2.32 -4.16 -4.61 -4.26 -1.66 -0.27 -0.92 -4.02 -3.78 -2.87 -3.0 -1.89 -1.91 -0.4 -1.61 -4.76 -4.96 -1.9 -2.52 -1.35 -2.08 -5.32 -6.69 -0.21 -5.15 -4.53 -2.56 -2.35 -3.33 0.84 -2.42 0.68 -1.35 -2.93 -1.64 -2.22
-2.17 -1.67 -0.89 -0.44 0.83 0.46 0.93 0.23 -0.03 -0.12 4.6 -1.66 -1.95 -0.88 -2.06 -0.71 -2.12 -0.57 -2.55 -2.05 -1.13 -1.45 -0.25 -0.85 0.63 -1.4 0.31 -3.13 -2.52 -2.15 -2.23 -0.82 -1.09 -0.67 -2.13 -2.15 -2.21 -3.6 -1.67 -1.02 -0.7 -1.21 -1.53 -2.23 -0.65 -2.27 -2.44 -2.15 -1.34 -3.19 2.78 -2.48 -1.72 -1.66 -2.73 -1.66 0.52 -1.92 0.63 -1.38 -1.05 -2.39 -1.66
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.