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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1.25 | 1.4 | 1.22 | -0.33 | -0.23 | -0.16 | -0.16 | -0.05 | -0.23 | -0.37 | -0.68 | -0.58 | -0.45 | 0.1 | -0.32 | 0.14 | -0.27 | -0.07 | -0.16 | -0.53 | 0.07 | 0.4 | 0.58 | -0.76 | 0.41 | -0.52 | 0.19 | -0.29 | -0.14 | -0.14 | -0.27 | 0.2 | -0.67 | 0.65 | -0.21 | -0.19 | 0.96 | 0.65 | -0.27 | 0.21 | -0.33 | 0.27 | -0.1 | -0.35 | 0.14 | -0.27 | 0.33 | -0.0 | -2.2 | -6.88 | -1.72 | -4.23 | -0.19 | -0.15 | -0.26 | 0.92 | -0.04 | -0.63 | 0.13 | -0.52 | 0.35 | -0.29 | 0.11 | |
| 0.4 | 0.7 | 0.69 | -0.47 | 0.57 | 0.59 | -0.45 | 0.05 | 0.54 | 0.53 | 0.55 | -0.3 | -0.45 | -0.05 | -0.48 | -0.16 | -0.47 | -0.23 | -0.51 | 0.36 | 0.23 | -0.11 | -0.09 | -0.34 | -1.05 | -0.25 | 0.47 | -0.46 | -0.14 | -0.12 | -0.48 | -0.09 | 0.3 | 0.52 | -0.15 | -0.1 | 0.14 | -0.05 | 0.28 | 0.26 | -0.06 | 0.31 | -0.03 | -0.56 | -0.13 | -0.31 | -0.22 | -0.2 | -0.58 | -2.39 | -0.53 | -2.02 | -0.1 | -0.03 | 0.29 | 0.05 | 0.18 | -0.11 | 0.3 | 0.17 | 0.43 | -0.01 | 0.18 | |
| 3.07 | 2.54 | 2.26 | 2.64 | -1.08 | - | - | -0.73 | 0.4 | -0.53 | 0.34 | -0.51 | -1.17 | - | - | - | - | - | -1.06 | -0.14 | - | 0.45 | 0.59 | - | 0.04 | -1.58 | - | 1.23 | - | - | - | 0.24 | 0.84 | 0.85 | -0.65 | - | 2.55 | - | 0.85 | - | - | - | 1.27 | - | - | 1.26 | - | - | - | - | - | - | 0.39 | 0.7 | - | - | - | 0.78 | - | -0.15 | - | -0.12 | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.