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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1.41 | 1.59 | 1.41 | 1.86 | 2.28 | 2.38 | 2.85 | 2.53 | 2.06 | 1.92 | -7.01 | -4.4 | -1.84 | -1.44 | -1.82 | -1.41 | -1.39 | -1.95 | -3.1 | -2.86 | -6.52 | 0.44 | -0.56 | 0.24 | 1.51 | -1.01 | -1.15 | -2.53 | -0.69 | -1.78 | -0.94 | -1.88 | -2.7 | -6.18 | -0.75 | -1.57 | -0.34 | -5.1 | -2.76 | -1.15 | -3.7 | -1.16 | -3.45 | -1.3 | -1.62 | -2.4 | -2.2 | -1.26 | -4.73 | -2.26 | 0.49 | -1.5 | -2.18 | -3.2 | -3.84 | -1.12 | -5.89 | -3.72 | -6.98 | -3.14 | -0.83 | -3.42 | -1.2 | |
| 0.16 | -1.07 | -0.9 | -3.52 | 1.99 | 3.47 | 3.18 | 1.24 | 1.58 | 1.4 | -0.96 | -6.83 | -5.15 | -0.26 | -3.95 | -0.92 | -5.11 | -0.87 | -4.82 | -4.64 | -7.48 | 2.82 | 1.0 | -0.11 | 2.48 | -3.72 | -1.02 | -5.5 | -4.66 | -4.36 | -3.82 | -1.22 | -3.31 | -6.48 | -4.28 | -5.63 | -1.85 | -5.24 | -4.47 | -1.11 | -4.67 | -1.98 | -4.94 | -3.94 | -0.82 | -2.76 | -2.34 | -2.11 | -1.88 | -8.25 | 1.9 | -7.03 | -4.54 | -2.76 | -4.14 | -1.06 | -4.64 | -3.77 | -4.53 | -4.89 | -0.46 | -4.13 | 0.05 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.