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Heatmap: Cluster_73 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
-0.19 0.61 0.69 -0.5 -0.47 -0.3 -1.54 0.05 0.72 -0.34 1.74 -1.06 -1.87 1.34 -2.87 1.17 -1.82 -0.59 -1.2 0.91 -0.31 -0.44 0.15 -2.14 -1.92 -2.1 0.24 -0.32 -2.03 -0.3 -1.21 0.48 0.58 0.21 -1.15 -2.06 -0.15 0.05 0.83 0.13 0.36 0.99 -1.23 -1.35 1.51 -0.32 0.57 0.86 -0.28 -3.65 0.79 - -1.94 0.07 0.66 -0.08 -0.15 0.39 -1.94 0.59 -0.52 0.06 0.05
-2.59 -1.87 -0.65 -0.33 -2.39 -1.55 -2.44 -1.32 -3.2 -1.26 -0.62 -3.06 -0.9 0.78 -3.7 1.42 - 0.91 -2.02 1.02 -1.13 - - - - - -0.67 1.39 -2.17 -1.68 -3.62 2.23 -0.71 -0.11 -3.2 -1.19 -1.87 0.13 0.3 0.9 -0.71 -0.11 - -3.69 2.31 2.5 1.99 2.57 - - - -1.67 -2.46 2.16 -0.36 0.96 -1.65 -0.44 -2.75 -1.11 -0.35 -1.67 0.49
0.63 1.21 1.2 -0.39 -0.65 -0.53 -1.48 0.11 0.21 -0.66 0.04 -0.63 -0.87 0.01 -1.12 0.12 -1.11 0.02 -1.04 0.38 0.06 -0.18 0.6 -0.52 -0.59 -1.2 -0.23 0.81 -0.27 -0.02 -1.15 0.17 0.25 0.28 -0.36 -0.11 0.26 0.7 0.5 -0.28 0.21 0.33 -0.62 -1.04 0.26 0.85 1.21 1.1 -3.12 -4.13 -1.38 -2.71 -0.57 -0.4 0.32 0.53 -0.01 -0.03 0.01 0.38 -0.05 0.22 -0.29
-0.39 0.59 1.22 0.14 -0.76 -0.4 -0.43 0.36 0.26 -0.17 0.78 -1.59 0.41 2.48 -1.42 1.35 0.06 0.92 -0.46 -1.63 -1.66 -0.8 0.46 0.62 -1.95 -2.05 0.94 -1.26 -0.41 -1.48 -0.84 0.98 -1.24 -1.65 -0.33 -0.4 0.51 -0.41 -1.64 -0.64 0.93 -0.64 0.07 -0.61 0.59 -1.84 -0.21 0.99 -1.63 -2.0 1.25 - -0.55 -0.66 -0.89 0.27 -0.62 -1.3 -0.12 -1.23 -0.4 0.8 -1.19
-1.21 0.72 0.4 3.03 -0.29 -0.35 -3.71 -0.35 0.62 -1.91 2.8 -2.2 -0.84 0.51 -2.43 -0.25 -1.38 -0.33 -2.79 1.45 0.36 - - - - - 1.4 -2.05 - -2.01 -3.35 0.62 0.37 -0.11 -2.93 -2.26 -1.13 -0.19 0.28 -1.84 0.65 -0.42 -1.13 -2.8 0.75 -0.71 0.18 -0.43 -3.83 - -0.76 -2.4 -3.22 1.15 0.49 0.08 0.77 0.65 0.21 -0.11 0.51 0.41 -0.6
-0.36 - - - 0.98 -0.72 - 1.27 0.27 -1.25 -0.38 -0.23 - 1.45 - - 0.19 - - - - - - - - - -2.07 3.1 -0.33 - - 1.13 - - 0.55 - -1.0 3.53 0.14 1.14 - 1.73 - - 0.56 1.52 - - -0.27 - 1.22 - -0.06 0.95 2.15 - - 0.12 - 0.14 - 0.16 -
-1.64 -0.92 -1.93 2.21 -0.17 0.28 -2.26 -0.8 -1.59 -0.3 -0.09 - -1.16 1.74 - - 0.21 - 0.51 0.87 -1.17 - - - - - -3.37 1.22 -1.63 -1.8 -2.11 1.24 - -0.16 - -0.73 0.24 0.63 0.43 -0.15 -1.16 0.43 - -1.06 1.59 1.56 1.28 1.83 -1.56 -1.93 2.25 0.29 -2.92 0.67 -0.14 - -0.11 -1.3 - 1.65 0.87 0.87 -
-0.32 0.09 0.54 0.62 -1.49 -0.5 -0.58 -0.1 -0.7 -0.93 0.16 -2.23 -2.64 -0.57 -3.01 -0.86 -2.83 0.19 -3.09 0.74 -0.76 - - - - - 0.09 1.64 -2.26 -2.58 -2.82 -0.44 -0.43 -1.53 -2.22 -2.12 0.72 1.0 0.8 -0.57 -0.76 -0.8 -3.04 -3.45 -0.55 2.0 2.31 2.84 -2.73 -2.93 0.63 -1.64 -3.53 0.1 1.45 0.86 -0.72 1.02 -1.07 0.53 -0.17 1.4 -0.55
-1.84 -1.7 -2.7 2.24 -1.48 -0.0 -0.85 -1.05 -1.39 -0.92 -0.28 -3.3 -1.63 - - -3.68 -1.89 0.07 - 1.62 -0.95 - - - - - 0.67 1.54 - - -1.88 -1.54 0.64 -1.35 -3.44 - -0.27 1.46 1.23 -0.93 0.22 0.07 - -2.93 -3.5 1.7 1.41 2.79 - - - - -3.14 -0.13 1.98 0.39 -0.1 1.99 -1.0 0.52 0.09 2.09 -0.61
0.57 1.29 1.22 0.1 -0.95 0.49 -0.1 0.04 -0.28 -0.25 0.92 - -3.26 1.02 -0.93 0.69 -1.23 1.67 -1.63 1.22 0.3 - - - - - 0.04 -1.89 - -1.79 - 1.78 1.53 0.54 -1.85 -0.23 0.01 -1.01 0.54 0.54 -2.26 1.19 -1.11 -3.26 2.44 -0.29 0.49 0.14 -2.67 - -1.18 - -1.24 2.16 -2.25 - -0.65 -2.4 - -1.27 -0.65 -0.24 0.34
-1.53 0.15 -0.17 -0.8 -0.39 -0.64 -0.69 -0.16 0.06 -0.49 0.04 -1.9 -1.39 -1.39 -1.47 -1.4 -1.64 -2.35 -1.29 0.17 0.4 -0.31 -0.41 -0.73 -0.66 -1.73 1.73 1.29 -1.22 -1.57 -1.76 -0.9 -0.01 1.35 -1.47 -1.54 0.15 -0.04 -0.41 -0.76 1.46 -0.25 -1.15 -1.66 -1.12 -0.49 1.79 1.61 -1.14 -3.81 -1.13 -2.05 -1.42 0.47 0.51 2.09 0.59 1.13 1.06 0.67 -0.64 0.89 -0.78
-0.17 -1.91 -2.91 2.26 -0.7 -0.2 -0.96 -1.05 -1.4 -1.98 -0.34 -0.64 -0.92 0.89 -2.73 0.48 -0.17 0.98 -0.15 0.1 0.57 - - - - - -0.06 0.35 -0.78 -2.03 -1.66 1.22 0.84 -0.74 -1.17 -0.23 0.54 -0.91 0.59 0.59 -0.93 0.97 0.06 -0.97 1.12 1.24 0.16 0.58 - - -1.65 -0.48 -0.2 2.87 -0.26 -0.59 -1.13 -1.18 -0.8 -0.73 0.29 0.54 0.1
-1.83 -0.58 -0.82 0.44 -2.5 0.0 -2.0 -0.7 -0.11 -1.34 -1.71 -1.29 -1.36 0.31 -1.19 0.61 -1.66 -1.08 -0.54 0.6 -0.72 -0.25 -2.04 -2.13 -1.28 -2.34 0.59 0.87 -1.43 -0.78 -0.98 -0.95 1.06 -0.52 -0.92 -0.81 -0.4 0.71 0.48 -0.7 0.47 -0.35 -1.22 -0.76 0.91 0.46 1.57 1.41 -3.92 -0.83 1.92 0.18 -0.91 0.21 0.08 2.1 -0.17 1.24 -1.57 0.65 -0.32 0.76 -0.03
-1.23 0.08 1.09 -1.54 -1.35 -0.51 0.18 1.59 0.03 -0.19 -1.25 -1.69 - -0.01 -3.31 0.52 - 1.37 -3.23 0.02 -2.35 - - - - - 0.64 -1.94 - -1.97 - 0.25 -0.33 -2.32 -2.82 -1.74 0.45 -2.06 0.27 0.85 -0.34 0.85 -3.49 -1.67 0.8 -0.33 0.11 1.78 -0.14 -0.51 4.04 -2.88 -2.51 -1.44 -0.31 -0.4 -0.7 -1.34 -1.38 -0.33 0.51 -0.3 -0.74
-4.86 -2.55 -1.8 0.41 -3.39 -0.33 -1.53 -1.38 -2.81 -1.64 0.97 - - 2.52 - 2.41 -2.75 1.47 - -0.77 -1.4 -3.75 -1.64 -3.21 - -3.2 0.8 -0.98 - -3.9 - 1.93 -2.38 -1.79 - - -4.58 -0.82 -0.79 0.72 -1.38 1.43 - - 2.69 1.19 1.59 0.84 - - - - -3.16 2.31 -1.04 -0.46 -3.33 - -1.85 -1.79 2.38 -0.03 1.23
0.07 -0.35 -1.08 3.05 -0.91 0.36 -0.83 0.19 0.21 -0.91 -1.42 -2.27 -1.9 - -0.91 1.05 -1.86 - - 1.45 -0.33 -1.69 0.66 -0.75 -1.28 -2.31 -0.07 0.49 -0.79 -0.93 - -0.91 1.4 -0.33 -0.82 -0.89 -0.18 0.65 1.9 -0.9 1.41 -0.32 - -2.81 -1.47 0.48 0.85 1.96 - - - - -1.36 -2.61 -0.31 -0.58 -0.88 -0.38 -0.38 0.68 0.12 1.82 -1.87
-0.7 0.37 0.25 -0.32 -1.03 -0.05 -1.09 -0.59 -0.78 -0.79 0.32 -1.21 -1.24 1.2 -1.0 1.15 -1.77 0.82 -0.97 0.62 -0.34 - - - - - 1.07 0.4 -1.5 -0.81 -1.1 0.78 0.62 -0.21 -1.28 -1.0 -0.95 -0.77 0.87 0.44 0.31 1.12 -1.38 -0.92 1.61 0.99 0.96 0.91 - - - - -1.47 1.08 0.32 0.75 0.34 0.74 0.19 0.84 0.42 0.98 0.5
-0.21 1.1 0.73 0.41 -1.8 -1.89 -2.16 -0.58 0.03 -1.56 -0.54 0.73 -1.08 1.1 -0.88 1.37 -0.23 0.65 -0.74 0.36 -0.71 -0.23 -0.35 -0.46 -2.05 -2.09 -0.18 0.78 -0.31 0.15 -0.35 1.45 -0.38 -0.07 -0.2 -0.24 0.49 -0.04 -0.42 -0.52 0.23 0.33 0.52 -0.71 1.4 1.2 0.16 0.41 -5.68 -6.05 -5.2 -5.83 0.51 1.28 -0.02 0.18 0.08 -0.39 -0.88 -0.37 -1.0 -0.4 -0.45
-2.27 -0.77 -0.76 - -1.97 -1.34 -1.55 -1.76 -1.45 -1.5 0.15 -1.95 -0.68 2.38 -1.99 1.1 -1.38 0.96 -0.92 1.47 -0.44 - - - - - 0.07 0.89 -2.49 -1.16 -1.72 1.28 1.65 -0.78 -0.86 -1.3 -0.87 - 1.06 0.81 1.45 1.32 -2.43 -1.95 1.09 1.26 0.44 -0.01 - - -0.92 - -2.78 1.56 0.89 -0.45 -1.55 0.87 -1.32 1.32 0.03 1.44 -0.4
-0.6 0.77 0.52 2.26 -0.9 -0.01 -0.8 -0.75 -0.41 -0.16 1.52 -1.87 -2.06 0.78 -1.59 0.56 -0.93 0.7 -2.12 -0.09 0.06 - - - - - 0.5 -0.41 -1.99 -1.95 -2.44 1.12 -1.93 0.25 -1.63 -1.71 -0.11 -1.72 -0.41 -0.5 0.01 -0.5 -1.97 -1.33 1.4 0.21 1.14 2.09 -2.32 -2.28 0.22 -1.47 -2.2 2.73 -0.68 -0.59 0.85 -0.84 0.02 -1.92 -0.31 0.33 -0.79
-0.26 0.13 0.14 2.68 -1.12 0.3 -2.52 0.03 0.03 -0.97 -1.61 0.12 -2.09 0.79 -0.51 -0.83 0.95 - - -0.08 - - - - - - 0.12 1.28 -0.57 - -0.04 -0.71 -0.11 - -0.77 -1.67 -0.3 - -0.1 - 2.22 0.48 -1.27 - - - 2.34 - - - -0.02 0.67 -1.28 0.41 0.91 -0.77 0.92 0.82 1.43 -0.1 -0.07 2.38 -1.1
-0.15 1.41 1.26 3.38 -2.93 -0.84 -0.72 -0.26 0.36 0.43 1.5 - - - -1.99 - - - - - -1.01 - - - - - 0.24 1.0 - - - -0.0 - 0.6 - - 0.58 - -0.98 - 1.59 - - -0.88 - - 1.46 0.43 0.2 0.24 2.9 0.04 -1.75 -0.74 0.03 -0.65 -0.94 0.88 -1.05 -0.98 0.04 2.36 -
-0.54 1.02 0.08 0.14 -1.27 -1.31 -0.16 -0.12 -1.09 -2.92 -1.16 -1.0 -2.98 1.62 -0.78 1.15 -1.11 0.84 -1.08 0.64 -1.4 - - - - - -1.49 -0.57 -1.87 -0.75 -1.32 1.68 1.48 0.03 -1.93 -1.18 0.06 0.57 1.29 0.04 0.93 1.13 -1.32 -1.14 2.21 -0.98 -0.2 -0.98 - -2.74 -0.88 -1.93 -0.94 1.17 0.75 0.95 -0.93 0.39 -1.44 0.94 0.52 0.76 0.23
-0.4 0.09 0.5 0.56 0.11 -0.17 0.34 -0.41 -0.31 -0.34 -0.09 -0.11 0.16 -1.19 -0.07 -1.12 0.12 -0.92 -0.22 -1.05 0.09 2.06 1.48 0.86 1.4 0.76 -0.65 -0.42 0.29 0.31 0.23 -1.13 -0.62 0.33 0.24 0.39 -0.47 0.17 -0.84 -1.84 -0.54 -1.57 0.22 0.06 -0.77 -0.47 -0.01 0.33 -1.25 -2.69 1.83 -0.95 0.05 -2.06 -1.36 0.31 -0.06 -0.98 -0.14 -1.67 -1.96 -1.07 -1.3
0.68 0.89 0.99 2.87 -0.34 -1.22 -0.24 -0.59 -0.46 -1.29 -2.22 0.57 0.84 -2.58 0.53 -2.59 0.62 -2.47 0.34 -1.41 -2.63 0.88 0.53 -1.0 0.66 0.0 -0.87 -3.16 0.71 0.74 0.34 -1.62 -1.28 -2.33 0.65 0.71 0.65 -2.04 -1.67 -2.54 -1.93 -0.85 0.94 0.48 -1.83 -2.42 -1.17 -0.6 -0.5 -0.42 2.55 0.58 1.12 -1.68 -1.66 -1.28 -2.86 -1.77 -3.74 -1.81 -1.41 -1.27 -2.02
-0.85 1.77 1.47 1.91 0.19 -0.64 -0.67 0.1 0.71 0.11 1.81 -1.84 -3.32 -0.31 -2.32 0.42 -2.8 0.02 -1.0 0.37 -1.21 2.32 1.15 1.13 0.16 -0.8 1.53 -0.46 -1.58 -1.44 -1.59 -0.21 0.66 -0.13 -1.15 -1.54 -0.12 -0.7 -0.26 -1.19 -0.34 0.21 -0.82 -1.44 -0.06 -0.56 -0.9 -1.44 -3.47 -3.42 -0.57 -1.89 -1.39 0.79 -1.83 -0.86 -0.81 -0.95 -0.54 -0.26 -0.46 -0.17 -2.05
-2.67 -1.61 -1.39 -0.78 -0.79 -1.34 -0.2 0.08 0.42 -1.27 0.48 -1.54 -2.7 -1.32 -3.17 -1.27 -3.14 -0.9 -2.49 1.1 0.3 - - - - - 0.57 0.0 -2.43 -2.3 -2.94 -1.01 0.95 0.65 -2.05 -2.19 -1.49 -0.73 0.58 -1.76 1.03 -1.33 -1.86 -3.34 -1.27 -0.53 -0.07 0.66 1.08 0.24 2.87 0.92 -2.35 -1.76 1.33 0.39 0.42 2.2 0.0 1.36 -1.48 2.52 -0.38
-0.14 0.83 0.29 2.88 -0.93 -0.41 -1.08 -0.77 -0.19 -1.18 -0.58 -0.69 -1.34 0.11 -0.47 1.13 -0.44 0.31 -1.59 0.7 -0.09 - - - - - -0.45 0.32 -1.16 -0.91 -1.26 -0.08 0.66 -1.07 -0.93 -0.17 0.26 -0.42 0.81 -0.33 -2.67 0.93 -0.24 -0.56 0.86 0.31 0.36 0.07 -0.06 - 1.43 -1.62 -0.84 -0.39 -0.32 1.14 -0.3 0.07 -1.71 0.35 0.54 0.96 0.17
-0.63 1.59 0.72 -0.06 0.23 0.61 0.56 0.98 1.25 0.3 2.68 -1.62 -1.85 -1.53 -1.53 - -0.11 -1.0 -2.78 0.64 -0.87 - - - - - 1.74 0.71 -3.38 -1.87 - -1.13 -0.86 0.47 -2.51 -1.73 0.17 -0.27 0.15 -1.84 0.72 -1.84 -1.21 -2.79 0.04 0.36 1.29 1.65 -1.67 -1.3 1.48 - -2.31 -3.66 0.17 1.48 -0.5 0.09 0.68 -0.26 -2.82 0.35 -1.83
-0.31 2.32 1.56 0.11 0.6 0.23 0.17 1.35 2.31 0.42 2.79 -3.36 -2.42 -0.38 -1.19 -2.15 -2.96 -0.93 -3.91 -0.66 -2.02 - - - - - 1.2 - - -2.65 -1.63 -3.59 -0.43 0.32 -1.21 -1.16 0.46 -2.74 -0.0 -0.19 0.89 -0.41 -2.58 -3.9 -3.57 -2.6 - -1.01 0.59 -0.07 3.04 -3.56 -2.46 -2.81 0.71 -0.35 0.02 -0.74 -0.26 -1.0 - -0.17 -2.0
-0.54 -0.41 -1.4 1.72 0.57 0.34 -1.74 0.51 1.22 -0.41 0.84 -1.01 -1.67 - -1.63 0.21 -1.59 0.94 -1.56 1.37 0.33 - - - - - 1.31 - - - - -0.25 - - - - -0.51 2.19 -0.64 - 0.93 0.94 -1.82 0.01 -0.21 1.33 -0.22 -0.25 -1.05 -0.42 0.44 0.38 -2.41 0.6 -0.63 -0.32 0.37 0.22 1.3 -0.65 0.38 1.96 1.37
-0.02 -0.72 1.03 1.25 -0.03 0.08 -2.95 0.45 1.33 0.39 -1.05 -0.9 -2.55 - - 0.32 -0.48 - -2.44 -0.51 1.26 - - - - - 1.83 -0.15 -2.0 - - 0.87 0.46 -0.53 -1.2 -0.06 1.11 -1.27 1.47 0.47 0.78 1.79 -1.7 0.35 -0.53 -0.14 - -0.13 -1.94 -1.31 0.13 -1.09 -0.31 -0.65 1.29 - -0.52 0.75 -1.6 0.47 -1.5 1.81 1.65
-0.81 -0.68 0.34 1.47 -2.87 -0.83 -1.18 -1.22 -0.37 -1.37 1.76 - - - -1.89 1.36 -0.86 - -0.23 1.12 - -0.69 -0.24 -2.37 -2.36 - 0.77 -0.51 0.17 - -1.85 1.49 1.09 0.09 -0.48 -1.47 0.39 1.9 1.1 1.1 -0.9 1.42 - - 1.98 1.09 - 0.5 - - 0.18 - -2.71 0.37 - 0.43 0.14 0.63 0.04 - 1.12 -0.88 1.11
-1.13 0.78 0.38 1.14 -1.61 -0.5 -3.55 -0.19 -0.2 -1.55 1.95 - - 1.31 - 1.51 -1.41 1.49 -1.81 1.48 -0.14 - - - - - 1.08 0.26 -1.4 -2.03 - 0.86 0.86 -0.45 - - 0.06 -1.22 0.36 0.73 0.54 2.14 -1.62 -1.39 1.06 -2.07 -2.0 0.28 -0.53 -2.22 1.33 - -4.22 0.69 -1.44 0.21 -0.1 -0.52 -0.19 -0.45 0.58 -0.1 1.28
-0.7 -0.17 -1.38 1.16 -2.6 -2.14 -0.78 -0.38 -0.85 -2.1 -1.72 -1.57 - -0.31 -3.19 1.14 -0.84 1.14 -3.16 1.72 0.09 - - - - - -0.26 -0.24 -1.71 -2.74 -2.16 0.89 1.59 0.37 - - -1.57 -2.01 0.11 - -2.23 0.95 - - 0.92 1.0 -1.76 0.2 -1.03 -0.98 3.52 1.93 -2.98 0.61 0.61 0.44 -2.16 1.06 -2.28 0.11 -1.19 1.14 -0.6
-1.77 -1.69 -1.57 -0.55 -0.06 0.03 -0.3 -0.08 -0.28 -0.8 -0.56 -1.4 -1.69 1.31 -1.69 1.18 -1.61 0.95 -1.41 0.29 -1.55 -1.23 -1.24 -2.31 -1.12 -1.82 0.68 -0.78 -1.6 -1.49 -1.53 1.16 1.59 -1.45 -1.59 -1.6 -1.52 0.54 0.39 1.35 1.51 1.45 -1.33 -1.57 1.23 1.04 0.53 0.95 -1.89 -4.56 -0.94 -2.0 -1.3 0.57 -0.99 -0.39 -1.56 0.25 -1.72 2.44 0.68 -0.12 -0.84
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.