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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | -O2 early | -O2 late | -O2 middle | 24h,Alfalfa | 24h,Fructose | 24h,Maltose | 24h,Sorbitol | 24h,Xylan | 24h,Xylan+Xylose | 24h,Xylose | Fructose,microbial culture | Laboratory transformant,Pure culture | MjkA KO,expo | MjkA KO,post expo | MjkA/mjkB KO,expo | MjkA/mjkB KO,post expo | MjkB KO,expo | MjkB KO,post expo | MjkB OE,expo | N593 kusA KO,2h | N593 kusA KO,8h | NW186,+1.1mM arg | NW186,+5mM citr | NW186,-Fe | NW305,+10gl Fe | NW305,-Fe | SEB,microbial culture | WT,2h,MM + L-rhamnose | WT,70% max biomass | WT,90% max biomass | WT,expo | WT,post expo | araR KO,2h | araR KO,8h | crhA-G KO,70% max biomass | crhA-G KO,90% max biomass | expo | gaaC KO,2h | gaaR KO,2h | gaaR KO,8h | gaaR/araR KO,2h | gaaR/araR KO,8h | gaaX KO,pure culture | histone deacetylase KO,expo | histone deacetylase KO,post expo | lraA KO,2h,MM + L-rhamnose | lraB KO,2h,MM + L-rhamnose | lraC KO,2h,MM + L-rhamnose | multiploid,asex,free 12h | multiploid,asex,free 6h | multiploid,asex,immob 12h | multiploid,asex,immob 6h | parent,pure culture | post expo | rhaR KO,2h | rhaR KO,2h,MM + L-rhamnose | rhaR KO,8h | rhaR/araR KO,2h | rhaR/araR KO,8h | rhaR/araR/gaaR KO,2h | rhaR/araR/gaaR KO,8h | rhaR/gaaR KO,2h | rhaR/gaaR KO,8h |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -0.35 | 0.37 | -1.21 | - | -1.44 | 4.08 | 1.16 | 1.8 | -2.16 | 0.35 | - | - | - | - | - | - | - | -2.77 | -2.96 | -0.68 | -3.06 | -4.44 | -4.46 | -4.43 | -2.1 | -4.46 | 0.92 | 2.3 | - | - | - | -1.32 | -0.04 | -0.72 | - | - | -1.99 | 0.64 | -0.45 | -0.44 | 0.65 | -0.71 | -4.2 | - | 0.39 | 1.53 | 2.16 | 2.83 | - | - | - | - | - | -3.85 | -2.02 | -0.7 | -0.99 | -1.59 | -3.1 | -0.71 | -0.2 | -0.69 | -1.02 | |
| -1.72 | -0.68 | -0.63 | -0.76 | -0.45 | 4.62 | -0.65 | 0.53 | 0.58 | 0.59 | 0.68 | -2.6 | -0.63 | -1.89 | -1.44 | -1.68 | -1.01 | -1.7 | -1.31 | -1.16 | -1.43 | 2.06 | 0.33 | -1.46 | -0.21 | -2.18 | 0.94 | -2.23 | -1.2 | -0.64 | -0.7 | -1.79 | -0.25 | -1.08 | -0.93 | -0.53 | -0.37 | -0.1 | -1.69 | -1.76 | -0.33 | -1.36 | -0.82 | -1.02 | -1.09 | -2.08 | -2.5 | -2.73 | - | - | - | - | -1.06 | -0.56 | -1.4 | -1.29 | -0.58 | -1.27 | -0.57 | -0.42 | -0.78 | -1.01 | -1.45 | |
| -4.56 | -2.53 | -3.83 | -3.29 | -2.74 | 5.9 | - | -4.49 | -3.21 | -1.71 | -1.13 | - | - | - | -3.48 | - | -4.02 | - | -5.02 | - | - | -2.87 | -3.7 | -3.47 | -3.44 | -3.18 | -3.06 | - | - | - | -4.02 | -4.68 | - | - | - | - | -4.18 | -3.87 | - | -4.06 | - | - | - | - | - | - | - | -3.66 | - | - | - | - | - | -3.78 | - | - | -3.06 | -3.21 | -4.14 | -4.07 | - | -3.05 | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.