Heatmap: Cluster_33 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
-O2 early
-O2 late
-O2 middle
24h,Alfalfa
24h,Fructose
24h,Maltose
24h,Sorbitol
24h,Xylan
24h,Xylan+Xylose
24h,Xylose
Fructose,microbial culture
Laboratory transformant,Pure culture
MjkA KO,expo
MjkA KO,post expo
MjkA/mjkB KO,expo
MjkA/mjkB KO,post expo
MjkB KO,expo
MjkB KO,post expo
MjkB OE,expo
N593 kusA KO,2h
N593 kusA KO,8h
NW186,+1.1mM arg
NW186,+5mM citr
NW186,-Fe
NW305,+10gl Fe
NW305,-Fe
SEB,microbial culture
WT,2h,MM + L-rhamnose
WT,70% max biomass
WT,90% max biomass
WT,expo
WT,post expo
araR KO,2h
araR KO,8h
crhA-G KO,70% max biomass
crhA-G KO,90% max biomass
expo
gaaC KO,2h
gaaR KO,2h
gaaR KO,8h
gaaR/araR KO,2h
gaaR/araR KO,8h
gaaX KO,pure culture
histone deacetylase KO,expo
histone deacetylase KO,post expo
lraA KO,2h,MM + L-rhamnose
lraB KO,2h,MM + L-rhamnose
lraC KO,2h,MM + L-rhamnose
multiploid,asex,free 12h
multiploid,asex,free 6h
multiploid,asex,immob 12h
multiploid,asex,immob 6h
parent,pure culture
post expo
rhaR KO,2h
rhaR KO,2h,MM + L-rhamnose
rhaR KO,8h
rhaR/araR KO,2h
rhaR/araR KO,8h
rhaR/araR/gaaR KO,2h
rhaR/araR/gaaR KO,8h
rhaR/gaaR KO,2h
rhaR/gaaR KO,8h
0.06 0.29 0.47 -1.92 -1.41 0.97 -2.18 0.59 -1.04 -0.35 -1.73 -1.87 -2.21 -0.89 -2.6 -0.67 -2.19 -0.97 -2.36 0.4 0.09 0.29 -1.21 -3.23 -2.09 -3.47 -0.18 2.14 -2.12 -1.68 -2.27 -0.71 0.47 -0.5 -2.03 -1.73 -1.14 2.92 1.0 -0.33 -0.16 -0.55 -1.64 -2.37 -0.69 1.62 1.22 2.08 -3.76 -3.68 -2.99 -3.04 -1.77 -2.32 0.87 1.55 -0.09 0.51 -0.59 0.49 -0.35 0.93 -0.01
-1.52 -0.3 -0.56 -1.86 -2.29 1.19 -2.18 0.79 -1.6 -0.82 -2.48 -3.24 -2.87 -1.64 -3.14 -1.21 -3.06 -1.24 -3.26 0.34 -0.11 -1.67 -2.46 -3.07 -3.52 -3.89 -0.96 2.09 -2.64 -2.33 -3.26 -1.1 0.79 -0.96 -2.65 -2.24 -2.2 2.9 1.71 -0.42 0.19 -0.78 -2.97 -3.67 -1.27 2.19 1.43 2.07 -7.98 -4.31 -2.29 -2.87 -3.01 -2.72 1.47 2.15 -0.28 0.91 -1.23 1.12 -0.74 1.11 -0.19
-0.96 -0.33 -0.5 0.02 -0.76 -0.16 -0.93 -0.33 -0.68 -0.7 -0.41 -0.9 -0.79 0.27 -0.97 0.2 -0.7 0.16 -0.75 0.25 0.51 -0.69 -1.22 -2.27 -2.35 -1.39 0.08 1.42 -0.58 -0.43 -0.82 0.27 0.44 0.18 -0.61 -0.41 -1.04 1.4 0.88 0.62 0.83 0.65 -1.04 -0.91 0.37 1.28 1.07 1.37 -3.71 -3.87 -3.22 -3.2 -0.81 -1.13 0.44 1.2 0.46 0.61 0.23 0.38 0.07 0.66 0.35
-0.51 0.48 0.43 0.01 -1.16 0.9 -1.31 0.22 -0.74 0.38 0.54 -0.87 -0.9 -0.41 -1.2 -0.16 -0.79 -0.28 -1.02 0.35 0.44 1.09 -0.03 -1.59 -1.39 -1.35 -0.06 0.26 -0.71 -0.27 -0.85 -0.07 0.62 -0.34 -0.56 -0.27 -0.9 1.41 1.35 0.13 0.87 0.19 -0.82 -1.02 0.04 0.29 -0.13 0.31 -4.22 -3.95 -1.89 -3.98 -0.49 0.2 1.09 0.25 0.58 0.83 -0.03 1.01 -0.39 0.79 -0.29
-0.86 -0.93 -1.0 -1.14 0.02 1.51 -0.71 1.22 0.92 0.23 1.23 0.22 -0.37 -0.33 -0.86 -0.32 0.02 -0.44 -0.49 -0.95 -1.11 0.78 0.66 2.08 -0.97 3.19 0.03 -2.35 -0.09 0.04 -0.34 -0.39 -0.48 -1.3 -0.03 0.01 -0.59 -1.55 -1.3 -1.35 -0.92 -0.72 -0.21 -0.34 -0.45 -2.19 -0.88 -0.61 0.54 -0.72 1.46 -1.41 -0.06 -1.62 -1.4 -1.91 -1.6 -1.06 -2.12 -1.36 -1.6 -1.46 -2.44
-2.1 -1.51 -1.85 -1.35 0.83 1.0 -0.06 0.89 0.93 -0.38 0.85 -1.43 -0.71 0.06 -0.81 -0.25 -0.65 -0.38 -1.02 0.06 0.23 0.13 0.92 -1.03 0.77 -0.46 -0.37 -0.66 -0.33 -0.27 -0.87 -0.5 0.2 -0.33 -0.58 -0.4 -2.02 0.57 1.55 0.1 1.1 0.62 -0.4 -0.78 -0.13 -0.23 0.21 0.28 -1.14 -6.06 -2.35 -6.39 -0.09 -3.57 1.0 0.94 0.18 0.64 -0.0 0.83 -1.44 1.34 -0.51
-1.18 0.12 -0.08 -1.72 -1.0 0.15 -1.07 -0.38 -0.33 -0.61 0.7 -1.05 -1.32 0.15 -1.17 0.22 -1.16 0.04 -0.99 0.19 0.16 1.26 1.12 0.52 0.01 -0.83 0.52 0.32 -0.96 -0.62 -1.25 0.29 0.23 0.15 -0.8 -0.67 -0.99 1.46 1.0 -0.03 0.98 0.4 -1.14 -1.08 0.24 -0.28 -0.08 0.36 -4.6 -6.67 -2.49 -3.81 -1.03 -1.78 0.84 0.44 0.52 0.66 0.24 0.98 0.24 1.33 0.16
-2.01 -0.44 -0.94 -2.8 -2.18 1.4 -1.77 0.03 -1.64 -0.96 -1.27 -2.49 -2.95 0.21 -3.12 0.33 -3.1 0.24 -2.86 0.6 -0.46 -0.89 -2.57 -4.14 -3.15 -3.39 0.85 1.18 -2.89 -2.45 -3.04 0.28 0.94 -1.29 -2.63 -2.23 -2.67 1.98 1.78 1.22 0.37 1.22 -2.43 -2.73 0.26 1.57 0.97 1.56 -5.03 -6.34 -3.83 -5.16 -2.34 0.08 0.96 0.95 -0.33 0.63 -0.87 1.36 0.81 1.28 1.13
-0.39 -0.52 -0.8 -0.67 1.35 2.27 0.87 1.8 2.39 1.2 -1.14 -1.33 -1.21 0.53 -1.41 0.52 -0.91 0.36 -1.46 -1.22 -0.73 -1.0 -1.74 0.96 -1.1 2.36 0.44 -1.76 -1.6 -1.52 -1.71 0.45 -0.96 -1.13 -1.7 -1.61 -0.2 -0.73 -1.49 -0.69 -0.46 -0.65 -1.27 -1.51 0.36 -1.9 -0.41 -0.22 0.1 0.1 1.17 -0.41 -1.23 -0.21 -1.53 -0.3 -0.96 -1.47 -1.86 -1.19 -0.78 -1.32 -0.99
-0.47 -0.94 -0.88 0.68 0.02 1.35 -0.69 0.25 0.89 -0.28 -1.56 -4.22 -0.44 1.14 -1.06 1.12 -0.54 0.85 -1.35 -0.89 -0.14 - - - - - 0.61 -0.17 -2.13 -2.57 -1.35 1.4 -1.2 -0.42 -2.03 -2.35 -0.26 1.12 -2.05 -0.53 0.82 -0.12 -2.8 -1.19 1.15 -0.35 0.9 0.95 1.19 0.78 2.48 0.74 -2.79 0.87 -1.11 0.23 -0.26 -0.57 -1.22 -0.19 -0.06 -0.71 -0.96
-0.55 -0.33 -0.14 0.05 -1.27 -0.24 -1.06 -0.67 -0.87 -0.55 -0.39 -1.01 -1.45 -0.6 -1.52 -0.83 -1.15 -0.76 -1.46 0.1 -0.09 -1.47 -1.63 -1.8 -1.84 -1.65 -0.19 2.14 -0.93 -0.65 -1.42 -0.83 0.35 -1.03 -0.96 -0.69 -1.31 1.45 0.82 -0.2 -0.08 -0.36 -1.29 -1.24 -0.99 2.22 1.7 2.0 -3.89 -2.96 -1.61 -1.4 -1.26 -1.76 0.51 2.51 -0.15 0.43 -1.05 1.07 -0.31 0.67 -0.4
-0.57 1.04 0.96 -0.63 -0.81 0.96 -1.23 -0.08 -0.44 0.0 -0.27 -2.36 -2.48 0.18 -2.38 0.41 -2.03 0.46 -2.08 -0.17 -0.06 0.27 -0.12 -1.77 -2.23 -1.8 0.32 0.91 -1.9 -1.57 -2.46 0.36 0.15 -0.56 -1.73 -1.27 -1.05 2.53 0.76 0.75 0.31 0.95 -1.75 -2.46 0.53 0.76 0.33 0.97 -4.28 -6.58 -2.88 -3.93 -1.65 -0.23 0.3 1.03 0.42 -0.1 0.2 0.54 0.66 0.47 0.74
0.17 -0.38 -0.2 0.16 0.1 0.65 -0.12 0.63 0.38 0.52 -0.93 0.21 -0.4 0.05 -0.68 0.05 -0.27 -0.1 -0.49 -0.01 0.59 -0.35 -0.44 -0.83 -0.91 -0.44 -0.5 -0.03 -0.04 0.17 -0.45 -0.12 0.33 -0.18 0.02 0.16 -0.39 2.07 0.92 -0.16 0.18 -0.35 0.08 -0.62 -0.26 -0.36 -0.36 -0.19 -2.63 -2.63 -1.48 -1.32 0.1 -0.86 0.73 0.47 0.56 0.18 -0.17 0.76 -0.58 0.32 -0.68
-0.44 -0.51 -0.49 -1.09 -0.59 -0.0 -0.58 0.1 -0.76 -0.16 0.09 -0.13 -0.16 0.21 -0.17 0.12 -0.04 0.39 0.06 -0.05 0.31 -0.81 -0.47 -1.21 -1.12 -0.94 0.09 1.69 -0.02 0.21 -0.05 -0.05 -0.01 -0.12 0.07 0.13 -0.28 1.17 0.44 -0.47 0.16 -0.5 -0.16 -0.07 0.07 1.12 1.19 1.01 -0.99 -2.4 -0.78 -2.37 -0.16 -0.53 0.06 1.31 0.26 -0.4 -0.14 -0.03 -0.82 -0.21 -0.7
-1.6 -0.48 -0.82 -3.65 -0.82 2.89 -0.71 0.46 -0.85 -0.25 -0.93 -1.77 -1.74 0.29 -1.83 0.16 -1.92 0.17 -2.26 0.45 0.14 0.91 -1.62 -4.67 -2.18 -4.01 0.64 -0.1 -1.87 -1.62 -1.7 0.07 0.37 -0.62 -1.69 -1.44 -2.3 1.04 1.43 1.47 -0.4 1.08 -1.52 -1.84 0.28 0.57 0.02 0.51 -4.15 -5.75 -2.65 -3.61 -1.09 -1.0 0.76 -0.16 0.98 0.25 -0.09 0.77 1.19 0.79 1.29
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.32 -0.44 -0.79 -2.62 -2.93 -0.13 -3.22 -0.76 -2.24 -1.12 -1.73 -2.17 -2.44 -0.5 -2.46 -0.48 -2.44 -0.49 -2.61 1.29 -0.55 -0.5 -1.33 -3.96 -3.22 -3.27 -0.9 1.72 -2.55 -1.73 -2.35 -0.52 1.63 -1.13 -2.3 -1.98 -1.72 2.01 1.88 0.75 -0.03 0.64 -2.61 -3.0 -0.44 2.01 1.33 1.86 -3.52 -5.76 -2.47 -2.98 -2.43 -0.24 1.6 1.4 -0.59 0.77 -1.31 1.47 0.27 1.53 0.47
-3.52 -3.53 -3.16 0.08 -1.2 0.74 -1.44 0.09 -1.04 -0.24 -0.81 -0.86 -1.3 -0.24 -1.42 0.01 -1.35 0.07 -0.99 0.96 0.15 0.54 -0.67 -2.26 -1.04 -1.79 0.06 1.26 -1.13 -0.8 -1.18 0.05 1.09 -0.51 -1.01 -0.81 -1.32 1.72 1.45 0.38 0.7 0.39 -0.85 -1.29 0.18 1.35 0.98 1.37 -4.15 -4.98 -2.58 -3.52 -0.91 0.65 0.92 0.23 0.47 0.65 -0.29 1.15 -0.12 0.99 -0.21
0.48 0.96 0.89 -1.35 -1.0 1.02 -1.06 0.52 -0.65 -0.05 -0.3 -0.97 -0.99 0.1 -0.98 0.2 -0.7 0.22 -0.94 0.28 0.29 -0.09 0.06 -2.01 -1.35 -1.99 -0.05 0.89 -1.09 -0.67 -1.02 0.1 0.59 -0.42 -0.91 -0.6 -0.33 1.08 1.34 0.17 0.01 -0.04 -0.64 -0.89 0.25 0.88 0.61 0.96 -2.57 -4.89 -0.8 -4.32 -0.62 -0.76 1.05 0.86 0.21 0.06 -0.69 1.09 -0.55 0.88 -0.61
-0.85 -0.57 -0.45 0.65 -0.1 1.56 -1.5 -0.67 0.41 0.84 -0.92 -0.45 -0.6 -0.86 -1.01 -0.86 -0.56 -0.39 -0.66 0.55 0.95 0.16 0.25 -0.5 -1.34 -0.83 -0.52 -0.9 -0.45 -0.58 -1.15 -0.52 0.54 0.41 -0.34 -0.27 -1.01 0.84 1.48 0.43 0.72 0.18 -0.57 -0.85 -0.03 -0.93 -1.08 -0.56 -3.18 -3.12 -1.16 -2.19 -0.47 -0.5 1.3 -0.26 0.89 0.83 0.48 1.2 0.19 1.14 0.02
-0.53 0.17 0.2 -1.41 -1.62 0.84 -2.87 -1.26 -1.47 -0.52 -1.41 -1.51 -1.74 -0.01 -1.79 0.02 -1.74 0.12 -1.72 0.89 0.24 -0.04 -1.01 -2.89 -1.99 -2.79 0.12 1.17 -1.87 -1.28 -1.79 0.09 1.13 -0.3 -1.63 -1.2 -1.24 1.49 1.94 0.39 0.47 0.36 -1.39 -1.81 0.04 1.28 0.67 1.09 -3.74 -4.58 -2.45 -3.65 -1.38 -0.78 1.65 0.7 0.19 0.94 -0.35 1.65 -0.05 1.48 0.02
0.65 0.95 0.84 -0.75 -1.56 1.16 -2.12 0.22 -0.63 -0.06 -0.54 -1.13 -1.48 -0.37 -1.45 -0.07 -1.18 -0.13 -1.38 -0.1 -0.6 0.56 -0.02 -2.21 -1.68 -2.1 -0.22 1.63 -1.59 -1.16 -1.26 0.04 0.14 -1.07 -1.38 -0.95 -0.27 1.45 1.11 -0.24 -0.02 -0.45 -1.1 -1.4 -0.06 1.61 0.82 1.46 -3.63 -4.76 -3.73 -4.55 -1.18 0.8 1.1 1.44 -0.15 0.22 -0.73 0.93 -0.59 0.93 -0.57
-1.46 -0.14 -0.35 -1.99 -0.54 0.83 -0.7 0.44 0.17 0.37 -0.1 -1.08 -1.64 -0.01 -1.69 0.09 -1.54 0.16 -1.21 0.76 0.24 -0.09 -0.21 -0.83 -0.73 -0.89 -0.08 0.48 -1.66 -1.15 -1.69 0.29 0.97 -0.62 -1.57 -1.07 -1.4 1.33 1.09 0.11 0.36 0.14 -1.05 -1.43 0.2 0.78 0.26 0.77 -4.04 -1.85 -0.54 -1.5 -1.11 0.38 1.16 1.06 0.26 0.99 -0.37 1.38 0.07 1.11 0.06
-2.85 -2.31 -2.03 -2.95 -2.37 1.34 -2.06 -1.34 -1.29 0.44 -0.9 -2.65 -2.83 -1.36 -2.75 -1.49 -2.44 -1.2 -2.54 1.13 -0.42 -1.17 -2.38 -3.88 -3.89 -3.34 -0.65 2.28 -2.69 -2.07 -2.56 -1.57 1.22 -1.46 -2.4 -1.94 -3.37 2.25 1.78 -0.67 0.23 -1.17 -2.41 -2.57 -1.47 0.87 0.33 2.61 -6.95 -4.31 -2.56 -3.64 -2.4 -1.69 1.79 1.95 0.38 1.34 -0.54 1.66 -0.1 1.53 0.28
-0.47 -0.04 -0.17 -0.26 -0.35 0.61 -1.87 -0.55 -0.35 -0.11 -0.22 0.34 -0.21 -0.95 -0.39 -1.04 -0.11 -0.85 0.08 -0.32 0.91 0.96 1.08 -0.64 -0.39 -0.04 -0.63 0.22 0.03 0.19 0.04 -1.03 -0.18 0.71 0.05 0.21 -0.22 1.14 0.44 -0.55 1.15 -0.62 0.2 -0.13 -0.86 -0.85 -0.66 -0.41 -1.94 -0.5 -0.93 -0.37 0.25 -0.78 0.58 -0.15 1.09 0.43 0.7 0.58 -0.8 0.24 -0.55
-0.27 -0.47 -0.32 -0.66 -2.19 1.04 -2.16 0.48 -1.6 -0.1 -1.31 -2.44 -3.03 -0.65 -3.05 -0.48 -2.69 -0.52 -2.63 1.11 0.07 -0.29 -1.76 -4.14 -2.4 -3.94 -0.31 1.07 -3.29 -2.46 -2.83 -0.42 1.17 -0.83 -3.06 -2.33 -1.4 2.42 1.87 0.48 0.55 0.28 -2.14 -3.03 -0.48 1.15 0.55 1.24 -5.93 -2.58 -2.53 -2.23 -2.15 -0.88 1.79 1.03 0.43 1.26 -0.27 1.55 -0.12 1.5 0.22
-1.5 -0.26 -0.32 -0.04 -1.53 1.37 -1.9 0.32 -0.53 -0.48 -1.45 -2.13 -2.75 -0.93 -2.77 -0.68 -2.56 -0.8 -3.14 0.76 -0.45 -1.2 -1.89 -4.17 -2.4 -3.65 -0.71 1.3 -3.1 -2.41 -3.13 -0.45 1.04 -1.31 -2.72 -2.21 -2.33 1.59 1.51 0.53 0.41 0.35 -2.06 -2.89 -0.54 1.67 1.15 1.6 -3.54 -3.05 -0.89 -2.06 -2.16 -0.8 1.53 1.91 -0.5 1.15 -1.22 1.65 0.53 1.63 0.81
2.12 2.23 2.3 0.3 0.82 0.3 0.76 0.46 0.63 -0.88 2.77 -3.9 -3.81 -2.02 -2.71 -4.1 -3.4 -2.23 -3.28 -2.72 -0.28 -2.08 -0.62 0.26 1.42 -1.25 -0.23 0.95 -3.62 -2.85 -2.8 -1.67 -2.14 0.22 -3.13 -2.99 1.55 -0.34 -1.51 -2.02 0.43 -1.34 -2.66 -3.34 -1.85 -0.02 0.5 0.96 -5.27 -8.22 -3.46 - -2.47 0.83 -1.94 1.17 0.84 -2.14 0.64 -0.72 -2.03 -1.29 -2.03
-0.55 -0.5 -0.3 0.03 -0.79 0.58 -0.86 0.3 0.15 -0.09 -0.78 -0.69 -1.42 -0.12 -1.53 -0.04 -1.26 -0.17 -1.35 0.18 0.11 -0.48 -0.5 -0.74 -1.15 -1.35 0.02 0.45 -1.13 -0.77 -1.58 -0.04 1.07 -0.3 -0.97 -0.77 -1.31 1.73 1.04 0.5 0.54 0.18 -0.86 -1.51 -0.09 0.82 0.47 0.91 -3.86 -2.67 1.19 -0.59 -1.02 -0.43 0.58 0.97 0.19 0.8 -0.51 1.41 0.08 0.77 0.01
-2.41 -0.15 -0.95 2.5 -1.81 0.81 -1.59 0.11 -0.76 -1.39 2.15 -2.29 -2.95 -0.08 -3.51 0.45 -3.14 -0.33 -3.88 -0.1 -2.2 0.24 0.68 0.08 0.65 -1.17 0.69 1.49 -4.01 -4.1 -4.45 0.35 1.76 -0.71 -5.01 -3.45 -2.97 0.94 0.91 -0.19 0.97 -0.34 -3.09 - 0.12 1.16 1.42 1.18 - - -2.85 - -3.71 -0.42 -0.18 0.52 -0.9 -0.18 -0.87 1.44 -1.68 0.64 -1.33
-0.93 -0.52 -0.58 -2.81 -0.73 1.76 -0.83 1.03 -0.32 -0.27 -0.51 -2.02 -2.0 -0.1 -2.17 -0.04 -2.04 -0.0 -2.33 0.46 -0.61 0.62 -0.8 -3.07 -2.03 -2.8 0.65 0.91 -2.1 -1.68 -2.15 -0.01 0.74 -1.84 -1.89 -1.52 -1.83 0.51 1.56 1.06 -0.06 1.07 -2.06 -2.13 0.02 1.82 1.34 1.65 -6.37 -6.76 -3.61 -4.7 -1.88 -0.47 0.88 1.37 -0.25 0.15 -1.03 1.02 0.71 0.93 0.56
-2.99 -0.65 -1.22 -4.64 -3.81 -0.05 -3.93 -0.5 -2.85 -1.65 -1.33 -3.44 -3.48 0.91 -3.23 1.03 -3.25 1.14 -3.32 1.39 -0.74 -1.42 -2.58 -5.17 -4.36 -5.24 0.81 1.14 -3.65 -3.04 -3.29 0.92 1.5 -0.86 -3.43 -3.04 -3.46 1.13 1.56 1.17 0.6 1.48 -3.04 -3.4 0.99 1.18 0.97 1.24 -4.16 -7.19 -1.72 -5.93 -2.79 0.89 1.12 0.71 -0.71 1.1 -1.16 1.4 0.86 1.45 0.81
-2.08 -1.15 -2.36 -2.4 -1.18 -1.53 -0.22 -0.56 -1.18 -1.88 1.01 -0.96 0.81 - 0.41 -2.33 1.11 - 0.7 - - 1.33 2.13 2.92 2.01 2.19 -0.3 - 0.4 0.55 1.31 -2.78 - - 0.92 0.64 -2.78 -0.6 -0.6 -2.18 -1.61 -2.18 0.24 0.97 -2.75 -1.2 - 0.22 1.17 - -1.1 - 0.4 -1.97 -0.85 0.61 -1.58 -1.2 - 0.4 - -0.16 -3.18
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.