ESU06166


Description : DNA-directed RNA polymerase II largest subunit


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ESU06166
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AFR95654 No alias DNA-directed RNA polymerase II subunit RPB1;RNA... 0.11 OF
AFR96255 No alias DNA-directed RNA polymerase III subunit RPC1;RNA... 0.02 OF
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.1 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.04 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.13 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.18 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.05 OF
CBF88741 No alias DNA-directed RNA polymerase Fragment 0.15 OF
EAA34861 No alias RNA polymerase Rpb1, domain 3 0.16 OF
EAL90799 No alias DNA-dependent RNA polymerase II largest subunit, putative 0.17 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.08 OF
EAU93247 No alias RNA polymerase II large subunit 0.08 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.07 OF
EED85755 No alias RNA polymerase Rpb1, domain 7 0.04 OF
EGR47538 No alias RNA polymerase Rpb1, domain 1 0.05 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.06 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.02 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.04 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.04 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.09 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.02 OF
SPBC28F2.12.1 No alias RNA polymerase II large subunit Rpb1... 0.04 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.05 OF
YDL140C No alias RNA polymerase II largest subunit B220; part of central... 0.08 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.05 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 357 522
IPR007075 RNA_pol_Rpb1_6 888 1072
IPR007081 RNA_pol_Rpb1_5 822 1419
IPR007083 RNA_pol_Rpb1_4 713 815
IPR007066 RNA_pol_Rpb1_3 525 684
IPR000684 RNA_pol_II_repeat_euk 1723 1736
IPR000684 RNA_pol_II_repeat_euk 1571 1584
IPR000684 RNA_pol_II_repeat_euk 1588 1609
IPR000684 RNA_pol_II_repeat_euk 1627 1640
IPR000684 RNA_pol_II_repeat_euk 1641 1657
IPR000684 RNA_pol_II_repeat_euk 1700 1714
IPR000684 RNA_pol_II_repeat_euk 1668 1680
IPR000684 RNA_pol_II_repeat_euk 1661 1674
IPR007080 RNA_pol_Rpb1_1 14 355
IPR007073 RNA_pol_Rpb1_7 1156 1291
No external refs found!