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  5. EJF56609

EJF56609


Description : RNA polymerase Rpb1, domain 3


Gene families : OG_03_0002856 (OF) Phylogenetic Tree(s): OG0002856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EJF56609
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AFR94954 No alias DNA-directed RNA polymerase I subunit RPA1;RNA... 0.13 OF
AOA67914 No alias RNA polymerase Rpb1, domain 5 0.09 OF
CAG78195 No alias RNA polymerase Rpb1, domain 1 0.08 OF
CAK39952 No alias RNA polymerase Rpb1, domain 2 0.09 OF
EAA26770 No alias RNA polymerase Rpb1, domain 4 0.11 OF
EAL90722 No alias DNA-directed RNA polymerase I subunit (Rpa190), putative 0.12 OF
EDN93737 No alias RNA polymerase, alpha subunit 0.11 OF
ESU08827 No alias RNA polymerase Rpb1, domain 1 0.11 OF
KHC83811 No alias DNA-directed RNA polymerase I subunit RPA1;"RNA... 0.07 OF
MGG_01158T0 No alias DNA-directed RNA polymerase I subunit RPA1... 0.03 OF
POW13373 No alias RNA polymerase Rpb1, domain 5;RNA polymerase Rpb1,... 0.06 OF
SPBC4C3.05c.1 No alias DNA-directed RNA polymerase I complex large subunit Nuc1... 0.06 OF
YOR341W No alias RNA polymerase I largest subunit A190 [Source:SGD;Acc:S000005868] 0.08 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 10 214
IPR007081 RNA_pol_Rpb1_5 1029 1661
IPR000722 RNA_pol_asu 499 689
IPR007083 RNA_pol_Rpb1_4 941 1022
IPR007066 RNA_pol_Rpb1_3 693 871
No external refs found!