AFR97260

Description : cleavage stimulation factor subunit 2;RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);Transcription termination and cleavage factor C-terminal;Hinge domain of cleavage stimulation factor subunit 2

Gene families : OG_03_0000890 (OF) Phylogenetic Tree(s): OG0000890_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AFR97260
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
EAL93206	No alias	polyadenylation factor subunit CstF64, putative	0.02	OF
ESU05547	No alias	Transcription termination and cleavage factor, C-terminal domain	0.03	OF
SPBC3B9.11c.1	No alias	mRNA cleavage and polyadenylation specificity factor...	0.02	OF

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	9	79
IPR026896	CSTF_C	422	456
IPR025742	CSTF2_hinge	189	267

External Links

No external refs found!

AFR97260

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation