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  5. AFR96255

AFR96255


Description : DNA-directed RNA polymerase III subunit RPC1;RNA polymerase Rpb1, domain 3;RNA polymerase Rpb1, domain 2;RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1, domain 5;RNA polymerase Rpb1, domain 4


Gene families : OG_03_0000411 (OF) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AFR96255
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AOA68763 No alias RNA polymerase Rpb1, domain 6 0.02 OF
AOA70277 No alias RNA polymerase Rpb1, domain 5 0.12 OF
CAG82229 No alias RNA polymerase Rpb1, domain 6 0.02 OF
CAG82462 No alias RNA polymerase Rpb1, domain 5 0.17 OF
CAK37321 No alias RNA polymerase Rpb1 C-terminal repeat 0.05 OF
CAK96852 No alias RNA polymerase Rpb1, domain 3 0.1 OF
CBF87003 No alias hypothetical protein similar to RNA polymerase III 0.09 OF
EAA27335 No alias RNA polymerase Rpb1, domain 5 0.08 OF
EAL92151 No alias DNA-directed RNA polymerase III largest subunit, putative 0.09 OF
EAU80581 No alias DNA-directed RNA polymerase III largest subunit 0.02 OF
EAU93247 No alias RNA polymerase II large subunit 0.02 OF
EDO03447 No alias RNA polymerase, alpha subunit 0.01 OF
EGR49933 No alias RNA polymerase Rpb1, domain 5 0.11 OF
EJF58827 No alias RNA polymerase Rpb1, domain 3 0.03 OF
ESU06166 No alias DNA-directed RNA polymerase II largest subunit 0.02 OF
ESU16499 No alias DNA-directed RNA polymerase III largest subunit 0.06 OF
KHC69799 No alias DNA-directed RNA polymerase II subunit RPB1;"RNA... 0.03 OF
KHC76777 No alias DNA-directed RNA polymerase III subunit RPC1;"RNA... 0.1 OF
MGG_04477T0 No alias DNA-directed RNA polymerase III subunit RPC1... 0.06 OF
MGG_04652T0 No alias DNA-directed RNA polymerase II largest subunit... 0.03 OF
POW02026 No alias RNA polymerase, alpha subunit;RNA polymerase Rpb1,... 0.03 OF
POW18023 No alias RNA polymerase Rpb1, domain 1;RNA polymerase Rpb1,... 0.07 OF
SPBC651.08c.1 No alias DNA-directed RNA polymerase III complex large subunit... 0.07 OF
YOR116C No alias RNA polymerase III largest subunit C160; part of core... 0.13 OF

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 539 717
IPR000722 RNA_pol_asu 362 536
IPR007080 RNA_pol_Rpb1_1 21 360
IPR007081 RNA_pol_Rpb1_5 855 1382
IPR007083 RNA_pol_Rpb1_4 745 848
No external refs found!